RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ATP1A4Q13733 1029 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 ZBED5Q49AG3 693 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 XAF1Q6GPH4 301 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 RPL13AP3Q6NVV1 102 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 OPN5Q6U736 354 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 ASCL5Q7RTU5 278 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 PRSS48Q7RTY5 328 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 GPR141Q7Z602 305 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 OAFQ86UD1 273 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 CYP4Z2PQ8N1L4 340 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 FAM26EQ8N5C1 309 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 C10orf53Q8N6V4 93 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 LRRC17Q8N6Y2 441 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 TMEM163Q8TC26 289 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 MYDGFQ969H8 173 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 PLEKHA8Q96JA3 519 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 ZNF582Q96NG8 517 aaPredicted RBP9.56□□□□□ -0.88
SS18-217ENST00000580958 SIGLEC11Q96RL6 698 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 IFT27Q9BW83 186 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 TEX12Q9BXU0 123 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 RBM38Q9H0Z9 239 aaKnown RBP9.56□□□□□ -0.88
SS18-217ENST00000580958 MCCC2Q9HCC0 563 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 GPR83Q9NYM4 423 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 IL17BQ9UHF5 180 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 GPR52Q9Y2T5 361 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 TMED7Q9Y3B3 224 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 WIF1Q9Y5W5 379 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 GVINP1Q7Z2Y8 2422 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 CEP250Q9BV73 2442 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 CNTRLQ7Z7A1 2325 aa9.56□□□□□ -0.88
SS18-217ENST00000580958 IGLV3-32A0A0A0MS00 114 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 EFCAB10A6NFE3 127 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 CCDC160A6NGH7 325 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 KDM4EB2RXH2 506 aaPredicted RBP9.55□□□□□ -0.88
SS18-217ENST00000580958 H3BSA7 217 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 BHLHE40O14503 412 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 TM4SF5O14894 197 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 SUSD5O60279 629 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 NDUFB2O95178 105 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 SLC2A10O95528 541 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 PPP1R3DO95685 299 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 SERPINA7P05543 415 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 CD82P27701 267 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 MSX1P28360 303 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 SLC6A6P31641 620 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 CASP3P42574 277 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 EMX1Q04741 257 aaPredicted RBP9.55□□□□□ -0.88
SS18-217ENST00000580958 ZNF91Q05481 1191 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 LTBQ06643 244 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 RAB39AQ14964 217 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 ZNF74Q16587 644 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 GXYLT1Q4G148 440 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 SYT14P1Q58G82 188 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 SLC25A30Q5SVS4 291 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 PRAMEF20Q5VT98 475 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 MEDAGQ5VYS4 303 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 CCDC81Q6ZN84 652 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 GRINAQ7Z429 371 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 LNX2Q8N448 690 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 STX19Q8N4C7 294 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 SVOPQ8N4V2 548 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 TMEM156Q8N614 296 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 IL22RA1Q8N6P7 574 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 SIRT6Q8N6T7 355 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 OR2M3Q8NG83 312 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 FAR1Q8WVX9 515 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 TMEM234Q8WY98 164 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 ST8SIA1Q92185 356 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 NKD1Q969G9 470 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 MUL1Q969V5 352 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 KTI12Q96EK9 354 aaPredicted RBP9.55□□□□□ -0.88
SS18-217ENST00000580958 LRR1Q96L50 414 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 MOGAT1Q96PD6 335 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 SDHAF3Q9NRP4 125 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 MED17Q9NVC6 651 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 CNOT2Q9NZN8 540 aaKnown RBP9.55□□□□□ -0.88
SS18-217ENST00000580958 ZNF337Q9Y3M9 751 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 CHCHD2Q9Y6H1 151 aaPredicted RBP9.55□□□□□ -0.88
SS18-217ENST00000580958 CEPT1Q9Y6K0 416 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 MED12Q93074 2177 aa9.55□□□□□ -0.88
SS18-217ENST00000580958 TRAV36DV7A0A075B6V5 113 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 ZC3H12DA2A288 527 aaKnown RBP9.54□□□□□ -0.88
SS18-217ENST00000580958 HTR3EA5X5Y0 456 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 CDRT15L2A8MXV6 281 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 SLC25A12O75746 678 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 INMTO95050 263 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 IGF2P01344 180 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 BGLAPP02818 100 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 ADRA2AP08913 450 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 CCL3P10147 92 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 DBTP11182 482 aaKnown RBP9.54□□□□□ -0.88
SS18-217ENST00000580958 PIPP12273 146 aaPredicted RBP9.54□□□□□ -0.88
SS18-217ENST00000580958 CEACAM1P13688 526 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 PRKCAP17252 672 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 C21orf33P30042 268 aaPredicted RBP9.54□□□□□ -0.88
SS18-217ENST00000580958 SLC15A1P46059 708 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 HTR3AP46098 478 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 MVKQ03426 396 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 ST3GAL4Q11206 333 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms