RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 NAT2P11245 290 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 MAGEB1P43366 347 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 ASMTP46597 345 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 P2RX1P51575 399 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 PAX8Q06710 450 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 MAD2L1BPQ15013 274 aaPredicted RBP13.7□□□□□ -0.22
VPS53-218ENST00000575207 KRT80Q6KB66 452 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 OR2L13Q8N349 312 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 IL17RDQ8NFM7 739 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 GPR119Q8TDV5 335 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 MAIP1Q8WWC4 291 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 RAB1CQ92928 201 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 TIMD4Q96H15 378 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 TBX15Q96SF7 602 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 SYT3Q9BQG1 590 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 IPPKQ9H8X2 491 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 CAB39LQ9H9S4 337 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 SLC12A4Q9UP95 1085 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 SLC9A8Q9Y2E8 581 aa13.7□□□□□ -0.22
VPS53-218ENST00000575207 AGAP5A6NIR3 686 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 NR5A2O00482 541 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 MBD3O95983 291 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 IL3P08700 152 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 CBR1P16152 277 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 LCN1P31025 176 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 TUBA1BP68363 451 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 TUBA4AP68366 448 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 TEKQ02763 1124 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 TBX2Q13207 712 aaPredicted RBP13.69□□□□□ -0.22
VPS53-218ENST00000575207 NRN1LQ496H8 165 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 TTC19Q6DKK2 380 aaPredicted RBP13.69□□□□□ -0.22
VPS53-218ENST00000575207 Q6ZSV7 163 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 TUBA1AQ71U36 451 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 MTERF4Q7Z6M4 381 aaKnown RBP13.69□□□□□ -0.22
VPS53-218ENST00000575207 ZAR1Q86SH2 424 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 BHLHE22Q8NFJ8 381 aaPredicted RBP13.69□□□□□ -0.22
VPS53-218ENST00000575207 GPR151Q8TDV0 419 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 HOXB13Q92826 284 aaPredicted RBP13.69□□□□□ -0.22
VPS53-218ENST00000575207 ARL8AQ96BM9 186 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 UPRTQ96BW1 309 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 ZHX1-C8orf76Q96EF9 292 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 CFAP36Q96G28 342 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 RHOJQ9H4E5 214 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 MYEF2Q9P2K5 600 aaKnown RBP13.69□□□□□ -0.22
VPS53-218ENST00000575207 FLVCR1Q9Y5Y0 555 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 CAPN6Q9Y6Q1 641 aa13.69□□□□□ -0.22
VPS53-218ENST00000575207 OIP5O43482 229 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 FGGP02679 453 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 HOXB1P14653 301 aaPredicted RBP13.68□□□□□ -0.22
VPS53-218ENST00000575207 ARL1P40616 181 aaPredicted RBP13.68□□□□□ -0.22
VPS53-218ENST00000575207 MAP3K8P41279 467 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 MAGEA8P43361 318 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 DBPQ10586 325 aaPredicted RBP13.68□□□□□ -0.22
VPS53-218ENST00000575207 GTF2H2Q13888 395 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 MSS51Q4VC12 460 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 RNASEH2BQ5TBB1 312 aaKnown RBP13.68□□□□□ -0.22
VPS53-218ENST00000575207 GTF2H2CQ6P1K8 395 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 LRP11Q86VZ4 500 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 CCDC103Q8IW40 242 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 PPIL6Q8IXY8 311 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 PIP4P2Q8N4L2 257 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 POMGNT2Q8NAT1 580 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 MUC7Q8TAX7 377 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 PHOSPHO1Q8TCT1 267 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 TSPAN17Q96FV3 270 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 FAM71F1Q96KD3 344 aaPredicted RBP13.68□□□□□ -0.22
VPS53-218ENST00000575207 UBXN10Q96LJ8 280 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 CDK15Q96Q40 435 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 ATOH8Q96SQ7 321 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 ZNF346Q9UL40 294 aaKnown RBP13.68□□□□□ -0.22
VPS53-218ENST00000575207 STARD9Q9P2P6 4700 aa13.68□□□□□ -0.22
VPS53-218ENST00000575207 IGHV1-69-2A0A0G2JMI3 117 aa13.67□□□□□ -0.22
VPS53-218ENST00000575207 DNPH1O43598 174 aa13.67□□□□□ -0.22
VPS53-218ENST00000575207 GPR137BO60478 399 aa13.67□□□□□ -0.22
VPS53-218ENST00000575207 JUNP05412 331 aaKnown RBP13.67□□□□□ -0.22
VPS53-218ENST00000575207 SFTPBP07988 381 aa13.67□□□□□ -0.22
VPS53-218ENST00000575207 MELTFP08582 738 aa13.67□□□□□ -0.22
VPS53-218ENST00000575207 NHLRC4P0CG21 123 aaPredicted RBP13.67□□□□□ -0.22
VPS53-218ENST00000575207 GLRXP35754 106 aa13.67□□□□□ -0.22
VPS53-218ENST00000575207 CCL8P80075 99 aa13.67□□□□□ -0.22
VPS53-218ENST00000575207 IFT88Q13099 833 aa13.67□□□□□ -0.22
VPS53-218ENST00000575207 SYT14P1Q58G82 188 aa13.67□□□□□ -0.22
VPS53-218ENST00000575207 GOLGA7Q7Z5G4 137 aa13.67□□□□□ -0.22
VPS53-218ENST00000575207 ABHD12BQ7Z5M8 362 aaPredicted RBP13.67□□□□□ -0.22
VPS53-218ENST00000575207 ISCA2Q86U28 154 aa13.67□□□□□ -0.22
VPS53-218ENST00000575207 MMGT1Q8N4V1 131 aa13.67□□□□□ -0.22
VPS53-218ENST00000575207 C1orf52Q8N6N3 182 aaKnown RBP13.67□□□□□ -0.22
VPS53-218ENST00000575207 NELFAQ9H3P2 528 aa13.67□□□□□ -0.22
VPS53-218ENST00000575207 TRAV40A0A0B4J280 105 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 WI2-2373I1.2A0A1W2PRP0 233 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 NKX2-2O95096 273 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 LGI1O95970 557 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 CD80P33681 288 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 NCBP2P52298 156 aaKnown RBP eCLIP13.66□□□□□ -0.22
VPS53-218ENST00000575207 H3F3AP84243 136 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 LCP2Q13094 533 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 HERPUD1Q15011 391 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 SGO1Q5FBB7 561 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 Q6ZTK2 550 aa13.66□□□□□ -0.22
VPS53-218ENST00000575207 ZNF771Q7L3S4 317 aaPredicted RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms