RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 ADIPOQQ15848 244 aa17.28■□□□□ 0.36
CCDC40-206ENST00000572083 MAPK14Q16539 360 aa17.28■□□□□ 0.36
CCDC40-206ENST00000572083 ZSWIM7Q19AV6 140 aa17.28■□□□□ 0.36
CCDC40-206ENST00000572083 LSM12Q3MHD2 195 aaKnown RBP17.28■□□□□ 0.36
CCDC40-206ENST00000572083 CCDC153Q494R4 210 aa17.28■□□□□ 0.36
CCDC40-206ENST00000572083 CLEC4FQ8N1N0 589 aa17.28■□□□□ 0.36
CCDC40-206ENST00000572083 KRTCAP2Q8N6L1 136 aa17.28■□□□□ 0.36
CCDC40-206ENST00000572083 FAM71CQ8NEG0 241 aa17.28■□□□□ 0.36
CCDC40-206ENST00000572083 TWIST2Q8WVJ9 160 aa17.28■□□□□ 0.36
CCDC40-206ENST00000572083 MOAP1Q96BY2 351 aa17.28■□□□□ 0.36
CCDC40-206ENST00000572083 SNX18Q96RF0 628 aa17.28■□□□□ 0.36
CCDC40-206ENST00000572083 KCNS3Q9BQ31 491 aa17.28■□□□□ 0.36
CCDC40-206ENST00000572083 C1orf50Q9BV19 199 aa17.28■□□□□ 0.36
CCDC40-206ENST00000572083 OCEL1Q9H607 264 aa17.28■□□□□ 0.36
CCDC40-206ENST00000572083 ATAD3AQ9NVI7 634 aa17.28■□□□□ 0.36
CCDC40-206ENST00000572083 PARPBPQ9NWS1 579 aa17.28■□□□□ 0.36
CCDC40-206ENST00000572083 NUP214P35658 2090 aaPredicted RBP17.28■□□□□ 0.36
CCDC40-206ENST00000572083 B9A039 149 aa17.27■□□□□ 0.36
CCDC40-206ENST00000572083 PIP5K1BO14986 540 aa17.27■□□□□ 0.36
CCDC40-206ENST00000572083 ANKRD28O15084 1053 aa17.27■□□□□ 0.36
CCDC40-206ENST00000572083 KCNAB3O43448 404 aa17.27■□□□□ 0.36
CCDC40-206ENST00000572083 VENTXO95231 258 aa17.27■□□□□ 0.36
CCDC40-206ENST00000572083 CPA3P15088 417 aa17.27■□□□□ 0.36
CCDC40-206ENST00000572083 PGM1P36871 562 aa17.27■□□□□ 0.36
CCDC40-206ENST00000572083 CHN2P52757 468 aa17.27■□□□□ 0.36
CCDC40-206ENST00000572083 HBA1P69905 142 aa17.27■□□□□ 0.36
CCDC40-206ENST00000572083 H3F3AP84243 136 aa17.27■□□□□ 0.36
CCDC40-206ENST00000572083 FAM174BQ3ZCQ3 159 aa17.27■□□□□ 0.36
CCDC40-206ENST00000572083 GRINAQ7Z429 371 aa17.27■□□□□ 0.36
CCDC40-206ENST00000572083 HMGN2P46Q86SG4 172 aa17.27■□□□□ 0.36
CCDC40-206ENST00000572083 ADGRG3Q86Y34 549 aa17.27■□□□□ 0.36
CCDC40-206ENST00000572083 LINC01356Q8N9X3 169 aa17.27■□□□□ 0.36
CCDC40-206ENST00000572083 SLC38A2Q96QD8 506 aa17.27■□□□□ 0.36
CCDC40-206ENST00000572083 ZNF350Q9GZX5 532 aa17.27■□□□□ 0.36
CCDC40-206ENST00000572083 TMEM181Q9P2C4 612 aa17.27■□□□□ 0.36
CCDC40-206ENST00000572083 LILRA1O75019 489 aa17.26■□□□□ 0.35
CCDC40-206ENST00000572083 PEX11AO75192 247 aa17.26■□□□□ 0.35
CCDC40-206ENST00000572083 SKAP2O75563 359 aaPredicted RBP17.26■□□□□ 0.35
CCDC40-206ENST00000572083 URI1O94763 535 aaPredicted RBP17.26■□□□□ 0.35
CCDC40-206ENST00000572083 AK1P00568 194 aa17.26■□□□□ 0.35
CCDC40-206ENST00000572083 TACSTD2P09758 323 aa17.26■□□□□ 0.35
CCDC40-206ENST00000572083 DAOP14920 347 aa17.26■□□□□ 0.35
CCDC40-206ENST00000572083 MATN1P21941 496 aa17.26■□□□□ 0.35
CCDC40-206ENST00000572083 GIFP27352 417 aa17.26■□□□□ 0.35
CCDC40-206ENST00000572083 MAPK1P28482 360 aa17.26■□□□□ 0.35
CCDC40-206ENST00000572083 PPOXP50336 477 aa17.26■□□□□ 0.35
CCDC40-206ENST00000572083 IDH3GP51553 393 aaPredicted RBP17.26■□□□□ 0.35
CCDC40-206ENST00000572083 ARHGAP11BQ3KRB8 267 aa17.26■□□□□ 0.35
CCDC40-206ENST00000572083 EMBQ6PCB8 327 aa17.26■□□□□ 0.35
CCDC40-206ENST00000572083 C16orf62Q7Z3J2 963 aa17.26■□□□□ 0.35
CCDC40-206ENST00000572083 C10orf107Q8IVU9 208 aa17.26■□□□□ 0.35
CCDC40-206ENST00000572083 RAB1BQ9H0U4 201 aa17.26■□□□□ 0.35
CCDC40-206ENST00000572083 PLK3Q9H4B4 646 aa17.26■□□□□ 0.35
CCDC40-206ENST00000572083 MGAM2Q2M2H8 2515 aa17.25■□□□□ 0.35
CCDC40-206ENST00000572083 SNUPNO95149 360 aaKnown RBP17.25■□□□□ 0.35
CCDC40-206ENST00000572083 CRYAAP02489 173 aa17.25■□□□□ 0.35
CCDC40-206ENST00000572083 CHRNGP07510 517 aa17.25■□□□□ 0.35
CCDC40-206ENST00000572083 IMPDH2P12268 514 aa17.25■□□□□ 0.35
CCDC40-206ENST00000572083 CLK1P49759 484 aaKnown RBP17.25■□□□□ 0.35
CCDC40-206ENST00000572083 ACTG1P63261 375 aa17.25■□□□□ 0.35
CCDC40-206ENST00000572083 CCNIQ14094 377 aa17.25■□□□□ 0.35
CCDC40-206ENST00000572083 SLC17A1Q14916 467 aa17.25■□□□□ 0.35
CCDC40-206ENST00000572083 TRIP10Q15642 601 aa17.25■□□□□ 0.35
CCDC40-206ENST00000572083 BHLHB9Q6PI77 547 aa17.25■□□□□ 0.35
CCDC40-206ENST00000572083 TRMT10CQ7L0Y3 403 aaKnown RBP17.25■□□□□ 0.35
CCDC40-206ENST00000572083 C6orf120Q7Z4R8 191 aa17.25■□□□□ 0.35
CCDC40-206ENST00000572083 ZCCHC24Q8N2G6 241 aaKnown RBP17.25■□□□□ 0.35
CCDC40-206ENST00000572083 SEMA6DQ8NFY4 1073 aa17.25■□□□□ 0.35
CCDC40-206ENST00000572083 HPS1Q92902 700 aa17.25■□□□□ 0.35
CCDC40-206ENST00000572083 SLC35G5Q96KT7 338 aa17.25■□□□□ 0.35
CCDC40-206ENST00000572083 KATNB1Q9BVA0 655 aa17.25■□□□□ 0.35
CCDC40-206ENST00000572083 GATA5Q9BWX5 397 aaPredicted RBP17.25■□□□□ 0.35
CCDC40-206ENST00000572083 METRNQ9UJH8 293 aa17.25■□□□□ 0.35
CCDC40-206ENST00000572083 TRAPPC4Q9Y296 219 aa17.25■□□□□ 0.35
CCDC40-206ENST00000572083 SLC35A3Q9Y2D2 325 aa17.25■□□□□ 0.35
CCDC40-206ENST00000572083 DUXAA6NLW8 204 aa17.24■□□□□ 0.35
CCDC40-206ENST00000572083 CLDN24A6NM45 220 aa17.24■□□□□ 0.35
CCDC40-206ENST00000572083 EIF1BO60739 113 aaKnown RBP17.24■□□□□ 0.35
CCDC40-206ENST00000572083 PDE5AO76074 875 aa17.24■□□□□ 0.35
CCDC40-206ENST00000572083 IDH2P48735 452 aaKnown RBP17.24■□□□□ 0.35
CCDC40-206ENST00000572083 CDH15P55291 814 aa17.24■□□□□ 0.35
CCDC40-206ENST00000572083 SLC35A1P78382 337 aa17.24■□□□□ 0.35
CCDC40-206ENST00000572083 PLAURQ03405 335 aa17.24■□□□□ 0.35
CCDC40-206ENST00000572083 EFNB3Q15768 340 aa17.24■□□□□ 0.35
CCDC40-206ENST00000572083 TYW3Q6IPR3 259 aaKnown RBP17.24■□□□□ 0.35
CCDC40-206ENST00000572083 AGR3Q8TD06 166 aa17.24■□□□□ 0.35
CCDC40-206ENST00000572083 COQ8BQ96D53 544 aa17.24■□□□□ 0.35
CCDC40-206ENST00000572083 PPP3R2Q96LZ3 170 aa17.24■□□□□ 0.35
CCDC40-206ENST00000572083 ZNF385AQ96PM9 386 aaKnown RBP17.24■□□□□ 0.35
CCDC40-206ENST00000572083 NAA11Q9BSU3 229 aaPredicted RBP17.24■□□□□ 0.35
CCDC40-206ENST00000572083 DUSP26Q9BV47 211 aa17.24■□□□□ 0.35
CCDC40-206ENST00000572083 OR51I1Q9H343 314 aa17.24■□□□□ 0.35
CCDC40-206ENST00000572083 METTL17Q9H7H0 456 aaPredicted RBP17.24■□□□□ 0.35
CCDC40-206ENST00000572083 SEC61A2Q9H9S3 476 aa17.24■□□□□ 0.35
CCDC40-206ENST00000572083 TMED7-TICAM2A0A0A6YYA0 188 aa17.23■□□□□ 0.35
CCDC40-206ENST00000572083 RNF103-CHMP3A0A140T963 221 aa17.23■□□□□ 0.35
CCDC40-206ENST00000572083 TMEM72A0PK05 275 aa17.23■□□□□ 0.35
CCDC40-206ENST00000572083 AP3D1O14617 1153 aa17.23■□□□□ 0.35
CCDC40-206ENST00000572083 LYPLA1O75608 230 aaPredicted RBP17.23■□□□□ 0.35
CCDC40-206ENST00000572083 RGS9O75916 674 aaPredicted RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms