RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SYS1Q8N2H4 156 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 DNAJC5GQ8N7S2 189 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 OR51L1Q8NGJ5 315 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 OR2T27Q8NH04 317 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 THAP4Q8WY91 577 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 AKAP1Q92667 903 aaKnown RBP eCLIP20.93■□□□□ 0.94
VPS53-211ENST00000571805 RIT1Q92963 219 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 CACNG2Q9Y698 323 aa20.93■□□□□ 0.94
VPS53-211ENST00000571805 TYRP1P17643 537 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 EVI2BP34910 448 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 RPS11P62280 158 aaKnown RBP eCLIP20.92■□□□□ 0.94
VPS53-211ENST00000571805 CDK5R1Q15078 307 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 RPLP0P6Q8NHW5 317 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 ZNRF4Q8WWF5 429 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 SMIM19Q96E16 107 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 SPACA7Q96KW9 195 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 SEMA6CQ9H3T2 930 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 CCDC86Q9H6F5 360 aaKnown RBP20.92■□□□□ 0.94
VPS53-211ENST00000571805 OR5K4A6NMS3 321 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 LRRN3E7EW58 273 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 SERPINA3P01011 423 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 GABRG2P18507 467 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 ATF1P18846 271 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 DRD1P21728 446 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 RABIFP47224 123 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 EIF2B5Q13144 721 aaKnown RBP20.92■□□□□ 0.94
VPS53-211ENST00000571805 BICRALQ6AI39 1079 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 SYT9Q86SS6 491 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 OOSP2Q86WS3 158 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 PLCZ1Q86YW0 608 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 POMGNT2Q8NAT1 580 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 CNN2Q99439 309 aaKnown RBP20.92■□□□□ 0.94
VPS53-211ENST00000571805 GTPBP2Q9BX10 602 aaKnown RBP20.92■□□□□ 0.94
VPS53-211ENST00000571805 LRRN3Q9H3W5 708 aa20.92■□□□□ 0.94
VPS53-211ENST00000571805 RPRD1BQ9NQG5 326 aaKnown RBP20.92■□□□□ 0.94
VPS53-211ENST00000571805 A0A0A6YYC8 382 aaPredicted RBP20.91■□□□□ 0.94
VPS53-211ENST00000571805 A0A1W2PPK0 400 aa20.91■□□□□ 0.94
VPS53-211ENST00000571805 TCRBV21S2A2A0A5A6 115 aa20.91■□□□□ 0.94
VPS53-211ENST00000571805 I3L1I5 382 aaPredicted RBP20.91■□□□□ 0.94
VPS53-211ENST00000571805 SRP9P49458 86 aaKnown RBP20.91■□□□□ 0.94
VPS53-211ENST00000571805 GDI2P50395 445 aaKnown RBP20.91■□□□□ 0.94
VPS53-211ENST00000571805 NDUFAF6Q330K2 333 aa20.91■□□□□ 0.94
VPS53-211ENST00000571805 CDONQ4KMG0 1287 aa20.91■□□□□ 0.94
VPS53-211ENST00000571805 HACD4Q5VWC8 232 aa20.91■□□□□ 0.94
VPS53-211ENST00000571805 HSD17B8Q92506 261 aa20.91■□□□□ 0.94
VPS53-211ENST00000571805 SGTBQ96EQ0 304 aa20.91■□□□□ 0.94
VPS53-211ENST00000571805 DDOQ99489 341 aa20.91■□□□□ 0.94
VPS53-211ENST00000571805 POMT2Q9UKY4 750 aa20.91■□□□□ 0.94
VPS53-211ENST00000571805 ADAM18Q9Y3Q7 739 aa20.91■□□□□ 0.94
VPS53-211ENST00000571805 PIAS3Q9Y6X2 628 aa20.91■□□□□ 0.94
VPS53-211ENST00000571805 A0A0A6YYJ9 748 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 NOTOA8MTQ0 251 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 SEMA4FO95754 770 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 IGHV4-34P06331 123 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 EPXP11678 715 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 SIRPAP78324 504 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 GALK2Q01415 458 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 MAB21L1Q13394 359 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 BMPERQ8N8U9 685 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 OR4D9Q8NGE8 314 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 GRPEL2Q8TAA5 225 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 HAVCR2Q8TDQ0 301 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 RBM18Q96H35 190 aaKnown RBP20.9■□□□□ 0.94
VPS53-211ENST00000571805 MKKSQ9NPJ1 570 aaPredicted RBP20.9■□□□□ 0.94
VPS53-211ENST00000571805 HCN3Q9P1Z3 774 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 RPS6KB2Q9UBS0 482 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 SMLR1H3BR10 107 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 CPNE3O75131 537 aaKnown RBP20.9■□□□□ 0.94
VPS53-211ENST00000571805 NAA10P41227 235 aaPredicted RBP20.9■□□□□ 0.94
VPS53-211ENST00000571805 GBX2P52951 348 aaPredicted RBP20.9■□□□□ 0.94
VPS53-211ENST00000571805 ACTA2P62736 377 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 ACTG2P63267 376 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 NTRK2Q16620 822 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 TAF8Q7Z7C8 310 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 SLC35F2Q8IXU6 374 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 NECTIN4Q96NY8 510 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 LRIT1Q9P2V4 623 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 CLDN16Q9Y5I7 305 aa20.9■□□□□ 0.94
VPS53-211ENST00000571805 A0A087WUJ7 227 aa20.89■□□□□ 0.94
VPS53-211ENST00000571805 A0A0B4J203 849 aa20.89■□□□□ 0.94
VPS53-211ENST00000571805 CTNSO60931 367 aa20.89■□□□□ 0.94
VPS53-211ENST00000571805 UCHL1P09936 223 aa20.89■□□□□ 0.94
VPS53-211ENST00000571805 CT45A8P0DMV1 189 aa20.89■□□□□ 0.94
VPS53-211ENST00000571805 CT45A9P0DMV2 189 aa20.89■□□□□ 0.94
VPS53-211ENST00000571805 SNRPBP14678 240 aaKnown RBP20.89■□□□□ 0.94
VPS53-211ENST00000571805 DIO1P49895 249 aa20.89■□□□□ 0.94
VPS53-211ENST00000571805 GPR143P51810 404 aa20.89■□□□□ 0.94
VPS53-211ENST00000571805 IGLV3-21P80748 117 aaPredicted RBP20.89■□□□□ 0.94
VPS53-211ENST00000571805 STX4Q12846 297 aa20.89■□□□□ 0.94
VPS53-211ENST00000571805 ZSWIM7Q19AV6 140 aa20.89■□□□□ 0.94
VPS53-211ENST00000571805 PRTGQ2VWP7 1150 aa20.89■□□□□ 0.94
VPS53-211ENST00000571805 CT45A2Q5DJT8 189 aa20.89■□□□□ 0.94
VPS53-211ENST00000571805 LAMTOR1Q6IAA8 161 aa20.89■□□□□ 0.94
VPS53-211ENST00000571805 MCATQ8IVS2 390 aaKnown RBP20.89■□□□□ 0.94
VPS53-211ENST00000571805 NPEPL1Q8NDH3 523 aa20.89■□□□□ 0.94
VPS53-211ENST00000571805 OR14A16Q8NHC5 309 aa20.89■□□□□ 0.94
VPS53-211ENST00000571805 YIPF5Q969M3 257 aa20.89■□□□□ 0.94
VPS53-211ENST00000571805 MFRPQ9BY79 579 aa20.89■□□□□ 0.94
VPS53-211ENST00000571805 ABRACLQ9P1F3 81 aa20.89■□□□□ 0.94
VPS53-211ENST00000571805 HEATR5AQ86XA9 2040 aa20.89■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms