RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 ZFP3Q96NJ6 502 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 MCHR1Q99705 422 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 TRIM15Q9C019 465 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 CTPS2Q9NRF8 586 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 TINAGQ9UJW2 476 aa18.5■□□□□ 0.55
VPS53-210ENST00000571456 ZNF469Q96JG9 3925 aaPredicted RBP18.49■□□□□ 0.55
VPS53-210ENST00000571456 A0A0B4J2E0 115 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 A0A1B0GX12 115 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 SHISA8B8ZZ34 492 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 CCL21O00585 134 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 FRS3O43559 492 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 IFNW1P05000 195 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 THRBP10828 461 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 TIMP3P35625 211 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 CSNK2A1P68400 391 aaPredicted RBP18.49■□□□□ 0.55
VPS53-210ENST00000571456 OR1Q1Q15612 314 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 ACSF3Q4G176 576 aaPredicted RBP18.49■□□□□ 0.55
VPS53-210ENST00000571456 ALG10BQ5I7T1 473 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 EEF1A1P5Q5VTE0 462 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 LCN8Q6JVE9 175 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 RPTNQ6XPR3 784 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 FKBP9P1Q75LS8 142 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 COMTD1Q86VU5 262 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 DHFR2Q86XF0 187 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 FAM156AQ8NDB6 213 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 OR2V1Q8NHB1 315 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 STK35Q8TDR2 534 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 SMPDL3BQ92485 455 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 WNT2BQ93097 391 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 SLC38A4Q969I6 547 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 CPNE4Q96A23 557 aaPredicted RBP18.49■□□□□ 0.55
VPS53-210ENST00000571456 CCDC120Q96HB5 630 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 MPP4Q96JB8 637 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 ADGRG7Q96K78 797 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 TM9SF2Q99805 663 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 POTEKPQ9BYX7 375 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 LRMDAQ9H2I8 198 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 ALKBH4Q9NXW9 302 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.49■□□□□ 0.55
VPS53-210ENST00000571456 GMPR2Q9P2T1 348 aaKnown RBP18.49■□□□□ 0.55
VPS53-210ENST00000571456 TNFRSF10DQ9UBN6 386 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 TRAPPC4Q9Y296 219 aa18.49■□□□□ 0.55
VPS53-210ENST00000571456 A0A1B0GWA3 101 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 TRAPPC13A5PLN9 417 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 ELOA3DA6NLF2 546 aaPredicted RBP18.48■□□□□ 0.55
VPS53-210ENST00000571456 A8MVM7 634 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 M0R3H8 397 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 EIF1AYO14602 144 aaKnown RBP18.48■□□□□ 0.55
VPS53-210ENST00000571456 SEC14L5O43304 696 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 EFNA2O43921 213 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 NCK1P16333 377 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 ITGA2P17301 1181 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 HTR2AP28223 471 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 CLDN20P56880 219 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 SRYQ05066 204 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 SGCBQ16585 318 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 ELOA3BQ3SY89 546 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 TMEM176BQ3YBM2 270 aaPredicted RBP18.48■□□□□ 0.55
VPS53-210ENST00000571456 PGM2L1Q6PCE3 622 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 ATG4DQ86TL0 474 aaPredicted RBP18.48■□□□□ 0.55
VPS53-210ENST00000571456 UBQLNLQ8IYU4 475 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 ELOA3Q8NG57 546 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 ZNF524Q96C55 264 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 HSH2DQ96JZ2 352 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 DMRTA2Q96SC8 542 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 NPAS1Q99742 590 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 TUBA1CQ9BQE3 449 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 PACSIN3Q9UKS6 424 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 MCTS1Q9ULC4 181 aaKnown RBP18.48■□□□□ 0.55
VPS53-210ENST00000571456 MPDZO75970 2070 aa18.48■□□□□ 0.55
VPS53-210ENST00000571456 NCOA6Q14686 2063 aaPredicted RBP18.47■□□□□ 0.55
VPS53-210ENST00000571456 TMEM229AB2RXF0 380 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 GSC2O15499 205 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 CHP2O43745 196 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 OR5F1O95221 314 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 AGAP20933 346 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 SMSP52788 366 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 SUCLG1P53597 346 aaKnown RBP18.47■□□□□ 0.55
VPS53-210ENST00000571456 CLDN15P56746 228 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 RAC3P60763 192 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 GABPB1Q06547 395 aaPredicted RBP18.47■□□□□ 0.55
VPS53-210ENST00000571456 CTU2Q2VPK5 515 aaKnown RBP18.47■□□□□ 0.55
VPS53-210ENST00000571456 ENTPD8Q5MY95 495 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 RIPPLY2Q5TAB7 128 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 HBMQ6B0K9 141 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 GTF2IRD2BQ6EKJ0 949 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 OR2A2Q6IF42 318 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 GTF2IRD2Q86UP8 949 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 CYP4Z1Q86W10 505 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 VANGL1Q8TAA9 524 aaPredicted RBP18.47■□□□□ 0.55
VPS53-210ENST00000571456 ADAMTS16Q8TE57 1224 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 ZHX1-C8orf76Q96EF9 292 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 C14orf79Q96F83 325 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 PYURFQ96I23 114 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 TTYH2Q9BSA4 534 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 FAM215AQ9Y5M1 114 aa18.47■□□□□ 0.55
VPS53-210ENST00000571456 DOCK7Q96N67 2140 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 ABCA4P78363 2273 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 A0A087WUJ7 227 aa18.46■□□□□ 0.55
VPS53-210ENST00000571456 A0A0J9YW62 118 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms