RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 ZNF75CPQ92670 426 aaPredicted RBP9.64□□□□□ -0.87
VPS53-207ENST00000570510 APIPQ96GX9 242 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 MRGPRX4Q96LA9 322 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 SLC6A7Q99884 636 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 PLK3Q9H4B4 646 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 GLIPR2Q9H4G4 154 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 SLC17A5Q9NRA2 495 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 MED29Q9NX70 200 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 ASIC5Q9NY37 505 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 ARMCX1Q9P291 453 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 SLC17A7Q9P2U7 560 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 CARD8Q9Y2G2 431 aa9.64□□□□□ -0.87
VPS53-207ENST00000570510 TRRAPQ9Y4A5 3859 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 A0A1W2PQD3 144 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 hCG_2039718K7EN88 272 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 KLF11O14901 512 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 LSM1O15116 133 aaKnown RBP9.63□□□□□ -0.87
VPS53-207ENST00000570510 SEC22BO75396 215 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 PDE5AO76074 875 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 KCNK2O95069 426 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 PSMG1O95456 288 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 HSPA4LO95757 839 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 HKR1P10072 659 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 ARAFP10398 606 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 TFPIP10646 304 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 ANPEPP15144 967 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 GPR6P46095 362 aaPredicted RBP9.63□□□□□ -0.87
VPS53-207ENST00000570510 DIO1P49895 249 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 HTR6P50406 440 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 FOXA1P55317 472 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 SUMO3P55854 103 aaPredicted RBP9.63□□□□□ -0.87
VPS53-207ENST00000570510 CD226Q15762 336 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 ADIPOQQ15848 244 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 ADRM1Q16186 407 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 XKR7Q5GH72 579 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 ZNF311Q5JNZ3 666 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 C1QTNF12Q5T7M4 302 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 AGBL2Q5U5Z8 902 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 MTDHQ86UE4 582 aaKnown RBP9.63□□□□□ -0.87
VPS53-207ENST00000570510 ZCCHC24Q8N2G6 241 aaKnown RBP9.63□□□□□ -0.87
VPS53-207ENST00000570510 ZNF614Q8N883 585 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 WDR31Q8NA23 367 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 C1orf162Q8NEQ5 155 aaPredicted RBP9.63□□□□□ -0.87
VPS53-207ENST00000570510 OR52E4Q8NGH9 312 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 TWIST2Q8WVJ9 160 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 TLCD1Q96CP7 247 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 AMDHD1Q96NU7 426 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 PRPF18Q99633 342 aaKnown RBP9.63□□□□□ -0.87
VPS53-207ENST00000570510 KLHDC3Q9BQ90 382 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 UNKLQ9H9P5 680 aaKnown RBP9.63□□□□□ -0.87
VPS53-207ENST00000570510 NTN4Q9HB63 628 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 ACSS1Q9NUB1 689 aaPredicted RBP9.63□□□□□ -0.87
VPS53-207ENST00000570510 PARPBPQ9NWS1 579 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 MALT1Q9UDY8 824 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 DCTN4Q9UJW0 460 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 RAP2CQ9Y3L5 183 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 PPIAL4AQ9Y536 164 aa9.63□□□□□ -0.87
VPS53-207ENST00000570510 LOC105371242A0A075B767 164 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 TRAV20A0A0B4J274 112 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 LYNX1G3V0Z9 82 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 SPAG7O75391 227 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 KRT33AO76009 404 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 NKX2-2O95096 273 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 TFP02787 698 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 ITGA5P08648 1049 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 ALOX5P09917 674 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 LYNX1P0DP58 116 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 SAGP10523 405 aaPredicted RBP9.62□□□□□ -0.87
VPS53-207ENST00000570510 CHN1P15882 459 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 PRKCAP17252 672 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 FRKP42685 505 aaPredicted RBP9.62□□□□□ -0.87
VPS53-207ENST00000570510 MAGEA8P43361 318 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 KHKP50053 298 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 RNF144AP50876 292 aaPredicted RBP9.62□□□□□ -0.87
VPS53-207ENST00000570510 UBE2NP61088 152 aaKnown RBP9.62□□□□□ -0.87
VPS53-207ENST00000570510 ABCE1P61221 599 aaKnown RBP9.62□□□□□ -0.87
VPS53-207ENST00000570510 UBA52P62987 128 aaKnown RBP9.62□□□□□ -0.87
VPS53-207ENST00000570510 RIN1Q13671 783 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 PDE7AQ13946 482 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 CBFBQ13951 182 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 CASP8Q14790 479 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 PDK3Q15120 406 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 EFNB3Q15768 340 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 TOMM34Q15785 309 aaPredicted RBP9.62□□□□□ -0.87
VPS53-207ENST00000570510 ATP6AP1LQ52LC2 224 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 ATG16L1Q676U5 607 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 ZCCHC12Q6PEW1 402 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 CBLN3Q6UW01 205 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 TMPPEQ6ZT21 453 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 SPATA21Q7Z572 469 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 NUP43Q8NFH3 380 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 ZFP28Q8NHY6 868 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 NANPQ8TBE9 248 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 PIGXQ8TBF5 258 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 GPR119Q8TDV5 335 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 ARL5BQ96KC2 179 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 ANKRD27Q96NW4 1050 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 SLC38A2Q96QD8 506 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 KCNA7Q96RP8 456 aa9.62□□□□□ -0.87
VPS53-207ENST00000570510 HOXD1Q9GZZ0 328 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms