RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 OR7G2Q8NG99 324 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 TRMT10AQ8TBZ6 339 aaKnown RBP12.22□□□□□ -0.45
VPS4A-204ENST00000566354 PTP4A1Q93096 173 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 KISS1RQ969F8 398 aaPredicted RBP12.22□□□□□ -0.45
VPS4A-204ENST00000566354 KLHDC7BQ96G42 594 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 OR2M2Q96R28 347 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 TEAD3Q99594 435 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 CMC2Q9NRP2 79 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 GPR27Q9NS67 375 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 COPZ2Q9P299 210 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 TBC1D29Q9UFV1 150 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 MGAT4AQ9UM21 535 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 NPFFR2Q9Y5X5 522 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 TRAV6A0A075B6T7 132 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 A0A0G2JK05 382 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 SLC9B1P1A6NJY1 282 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 LEUTXA8MZ59 168 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 PRR23D1E9PI22 279 aaPredicted RBP12.21□□□□□ -0.45
VPS4A-204ENST00000566354 SC5DO75845 299 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 TCRBP04435 133 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 PRR23D2P0DMB1 279 aaPredicted RBP12.21□□□□□ -0.45
VPS4A-204ENST00000566354 ANXA3P12429 323 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 PEPDP12955 493 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 TBXA2RP21731 343 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 PER3P56645 1201 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 OR10A3P58181 314 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 EEF1A1P68104 462 aaKnown RBP12.21□□□□□ -0.45
VPS4A-204ENST00000566354 BTN3A2P78410 334 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 HSD17B12Q53GQ0 312 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 ANKRD39Q53RE8 183 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 FAM27D1Q5T7N8 215 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 FAM111BQ6SJ93 734 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 ASPGQ86U10 573 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 LRRC25Q8N386 305 aaPredicted RBP12.21□□□□□ -0.45
VPS4A-204ENST00000566354 DTX3Q8N9I9 347 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 TEX19Q8NA77 164 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 HCAR1Q9BXC0 346 aa12.21□□□□□ -0.45
VPS4A-204ENST00000566354 ELF5Q9UKW6 265 aaPredicted RBP12.21□□□□□ -0.45
VPS4A-204ENST00000566354 GOLGA4Q13439 2230 aaKnown RBP12.21□□□□□ -0.46
VPS4A-204ENST00000566354 A0A1B0GVC2 190 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 A6NIN4 97 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 E9PI62 339 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 TSC22D2O75157 780 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 REM1O75628 298 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 ZNF3P17036 446 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 CMPK1P30085 196 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 UQCRC1P31930 480 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 ACTR1BP42025 376 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 ACTR1AP61163 376 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 RPS7P62081 194 aaKnown RBP12.21□□□□□ -0.46
VPS4A-204ENST00000566354 PITPNAQ00169 270 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 FOXK2Q01167 660 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 SLC3A1Q07837 685 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 SRSF5Q13243 272 aaKnown RBP12.21□□□□□ -0.46
VPS4A-204ENST00000566354 TEX261Q6UWH6 196 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 CDH26Q8IXH8 852 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 CDK20Q8IZL9 346 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 TOMM5Q8N4H5 51 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 ZNF655Q8N720 491 aaPredicted RBP12.21□□□□□ -0.46
VPS4A-204ENST00000566354 OR11H7Q8NGC8 314 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 TMEM239Q8WW34 195 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 C10orf90Q96M02 699 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 ENKD1Q9H0I2 346 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 OR51J1Q9H342 316 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 ZFP64Q9NPA5 681 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 ZNF222Q9UK12 451 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 U3KQ87 197 aa12.21□□□□□ -0.46
VPS4A-204ENST00000566354 MDC1Q14676 2089 aaKnown RBP12.2□□□□□ -0.46
VPS4A-204ENST00000566354 TEX13CA0A0J9YWL9 993 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 UBL3O95164 117 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 CELA2BP08218 269 aaPredicted RBP12.2□□□□□ -0.46
VPS4A-204ENST00000566354 IFI30P13284 250 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 MAKP20794 623 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 PTNP21246 168 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 SRP9P49458 86 aaKnown RBP12.2□□□□□ -0.46
VPS4A-204ENST00000566354 E2F1Q01094 437 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 IKZF1Q13422 519 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 ZNF425Q6IV72 752 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 LUZP2Q86TE4 346 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 OR2L13Q8N349 312 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 MS4A15Q8N5U1 240 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 COL26A1Q96A83 441 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 SDF2Q99470 211 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 PCED1AQ9H1Q7 454 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 SPHK1Q9NYA1 384 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 A0A1W2PR77 199 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 M0R296 226 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 SLC22A5O76082 557 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 SBK2P0C263 348 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 TDGF1P13385 188 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 RAB3BP20337 219 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 CD38P28907 300 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 MMP15P51511 669 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 SLC16A1P53985 500 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 RAG2P55895 527 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 NRG3P56975 720 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 TSC22D1Q15714 1073 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 GPR68Q15743 365 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 Q3ZCU0 254 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 ACSM3Q53FZ2 586 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms