RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 C2CD4BA6NLJ0 364 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 USP27XA6NNY8 438 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 MPTX1A8MV57 137 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 ANKRD66B4E2M5 251 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 KRBOX1C9JBD0 128 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 H3BNH8 94 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 PRYO14603 147 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 SNAI2O43623 268 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 LIASO43766 372 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 GGCTO75223 188 aaKnown RBP4.64□□□□□ -1.67
VPS35-205ENST00000563984 UGT2B11O75310 529 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 NME6O75414 186 aaPredicted RBP4.64□□□□□ -1.67
VPS35-205ENST00000563984 RAD51DO75771 328 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 STBD1O95210 358 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 TRUB2O95900 331 aaKnown RBP4.64□□□□□ -1.67
VPS35-205ENST00000563984 BCL10O95999 233 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 MT-ND1P03886 318 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 TCRBP04435 133 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 ICAM1P05362 532 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 HAPLN1P10915 354 aaPredicted RBP4.64□□□□□ -1.67
VPS35-205ENST00000563984 CETPP11597 493 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 ANXA3P12429 323 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 CSNK2A2P19784 350 aaPredicted RBP4.64□□□□□ -1.67
VPS35-205ENST00000563984 STOMP27105 288 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 PSMB5P28074 263 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 PRDX6P30041 224 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 SDC4P31431 198 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 FOXN2P32314 431 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 ID1P41134 155 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 AQP2P41181 271 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 MATKP42679 507 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 PPOXP50336 477 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 CDH11P55287 796 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 SEC61GP60059 68 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 RAB2AP61019 212 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 SLC7A9P82251 487 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 GTF2BQ00403 316 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 IL5RAQ01344 420 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 SLC34A1Q06495 639 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 FGL1Q08830 312 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 CNTN1Q12860 1018 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 GAB1Q13480 694 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 ZNF846Q147U1 533 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 SPA17Q15506 151 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 TRIP10Q15642 601 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 NDUFA9Q16795 377 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 SOWAHAQ2M3V2 549 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 QRICH1Q2TAL8 776 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 ZNF260Q3ZCT1 412 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 ZFP69Q49AA0 526 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 SPIN3Q5JUX0 258 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 CTSL3PQ5NE16 218 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 PRAMEF7Q5VXH5 474 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 TTC23Q5W5X9 447 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 FBXW9Q5XUX1 488 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 NANOGP8Q6NSW7 305 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 RNASEKQ6P5S7 137 aaKnown RBP4.64□□□□□ -1.67
VPS35-205ENST00000563984 C17orf99Q6UX52 265 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 DLEU7Q6UYE1 221 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 GCNT7Q6ZNI0 430 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 MOB2Q70IA6 237 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 CREB3L2Q70SY1 520 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 FAM57BQ71RH2 274 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 APTXQ7Z2E3 356 aaKnown RBP4.64□□□□□ -1.67
VPS35-205ENST00000563984 CENPVQ7Z7K6 275 aaPredicted RBP4.64□□□□□ -1.67
VPS35-205ENST00000563984 SATL1Q86VE3 508 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 GABRG1Q8N1C3 465 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 TMEM156Q8N614 296 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 BCORP1Q8N888 145 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 ITFG1Q8TB96 612 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 WIPF2Q8TF74 440 aaPredicted RBP4.64□□□□□ -1.67
VPS35-205ENST00000563984 FAR1Q8WVX9 515 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 C1orf54Q8WWF1 131 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 DNAJB3Q8WWF6 145 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 IGFBPL1Q8WX77 278 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 NSMAFQ92636 917 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 SLC35C1Q96A29 364 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 NXNL1Q96CM4 212 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 SNRNP40Q96DI7 357 aaKnown RBP4.64□□□□□ -1.67
VPS35-205ENST00000563984 ZHX1-C8orf76Q96EF9 292 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 OTUB1Q96FW1 271 aaPredicted RBP4.64□□□□□ -1.67
VPS35-205ENST00000563984 TRMT61AQ96FX7 289 aaKnown RBP4.64□□□□□ -1.67
VPS35-205ENST00000563984 MED8Q96G25 268 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 CELF6Q96J87 481 aaKnown RBP4.64□□□□□ -1.67
VPS35-205ENST00000563984 TMEM56Q96MV1 263 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 KCNA7Q96RP8 456 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 VPS25Q9BRG1 176 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 TTYH2Q9BSA4 534 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 BTBD10Q9BSF8 475 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 C20orf24Q9BUV8 137 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 GATA5Q9BWX5 397 aaPredicted RBP4.64□□□□□ -1.67
VPS35-205ENST00000563984 MTHFD2LQ9H903 347 aaPredicted RBP4.64□□□□□ -1.67
VPS35-205ENST00000563984 POPDC2Q9HBU9 364 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 HHATLQ9HCP6 504 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 SLC2A9Q9NRM0 540 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 RRP7BPQ9NSQ0 103 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 CUTCQ9NTM9 273 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 DDIT4Q9NX09 232 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 HSPE1-MOB4S4R3N1 261 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 TMEM56-RWDD3S4R434 201 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms