RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 GSTA3Q16772 222 aa15.18■□□□□ 0.02
VPS9D1-203ENST00000563798 PDCD4Q53EL6 469 aaKnown RBP15.18■□□□□ 0.02
VPS9D1-203ENST00000563798 C1QTNF12Q5T7M4 302 aa15.18■□□□□ 0.02
VPS9D1-203ENST00000563798 DNM1P46Q6ZS02 220 aa15.18■□□□□ 0.02
VPS9D1-203ENST00000563798 HMGN2P46Q86SG4 172 aa15.18■□□□□ 0.02
VPS9D1-203ENST00000563798 MUS81Q96NY9 551 aa15.18■□□□□ 0.02
VPS9D1-203ENST00000563798 ZBTB18Q99592 522 aa15.18■□□□□ 0.02
VPS9D1-203ENST00000563798 PAIP2Q9BPZ3 127 aaKnown RBP15.18■□□□□ 0.02
VPS9D1-203ENST00000563798 TRAF4Q9BUZ4 470 aaPredicted RBP15.18■□□□□ 0.02
VPS9D1-203ENST00000563798 ADAM19Q9H013 955 aa15.18■□□□□ 0.02
VPS9D1-203ENST00000563798 NPAP1Q9NZP6 1156 aa15.18■□□□□ 0.02
VPS9D1-203ENST00000563798 TMED7Q9Y3B3 224 aa15.18■□□□□ 0.02
VPS9D1-203ENST00000563798 MAGED1Q9Y5V3 778 aaPredicted RBP15.18■□□□□ 0.02
VPS9D1-203ENST00000563798 DSPPQ9NZW4 1301 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 TLN2Q9Y4G6 2542 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 A0A1W2PP18 115 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 PDLIM1O00151 329 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 KRT75O95678 551 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 CD8AP01732 235 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 IMPDH2P12268 514 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 IDO1P14902 403 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 IDUAP35475 653 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 SLC35A1P78382 337 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 EPS8Q12929 822 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 TNK1Q13470 666 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 STK11Q15831 433 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 COX20Q5RI15 118 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 MSANTD1Q6ZTZ1 278 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 ZNF440Q8IYI8 595 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 ANKRD42Q8N9B4 389 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 WDR60Q8WVS4 1066 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 DDIT4LQ96D03 193 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 AMBRA1Q9C0C7 1298 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 ASB6Q9NWX5 421 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 TAS2R16Q9NYV7 291 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 CISD1Q9NZ45 108 aaKnown RBP15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 MGAT4BQ9UQ53 548 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 SLC25A15Q9Y619 301 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 HIVEP2P31629 2446 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 CSPG4Q6UVK1 2322 aa15.17■□□□□ 0.02
VPS9D1-203ENST00000563798 CADP27708 2225 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 TMEM72A0PK05 275 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 CDHR4A6H8M9 788 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 CFAP73A6NFT4 308 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 RFXANKO14593 260 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 RAMP1O60894 148 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 MRPL33O75394 65 aaKnown RBP15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 GSNP06396 782 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 NR2F1P10589 423 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 UQCRBP14927 111 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 IL7RP16871 459 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 TACR3P29371 465 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 OR2B6P58173 313 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 KRTAP1-1Q07627 177 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 ZSWIM7Q19AV6 140 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 CLEC12BQ2HXU8 276 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 MRPL2Q5T653 305 aaKnown RBP15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 ATG16L1Q676U5 607 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 OR7E24Q6IFN5 339 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 PAQR6Q6TCH4 344 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 CCDC103Q8IW40 242 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 PIF1Q9H611 641 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 SDR39U1Q9NRG7 319 aaPredicted RBP15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 SLC6A13Q9NSD5 602 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 FAIMQ9NVQ4 179 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 PARPBPQ9NWS1 579 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 CALML5Q9NZT1 146 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 ZIM2Q9NZV7 527 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 SLC9A8Q9Y2E8 581 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 FLVCR1Q9Y5Y0 555 aa15.16■□□□□ 0.02
VPS9D1-203ENST00000563798 SLC22A3O75751 556 aa15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 TFPTP0C1Z6 253 aa15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 PTAFRP25105 342 aa15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 SLC17A1Q14916 467 aa15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 GABRA6Q16445 453 aa15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 TMEM108Q6UXF1 575 aa15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 PEX5LQ8IYB4 626 aa15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 UBE2J2Q8N2K1 259 aa15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 C17orf78Q8N4C9 275 aa15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 C1orf162Q8NEQ5 155 aaPredicted RBP15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 GTPBP3Q969Y2 492 aaKnown RBP15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 TMEM45BQ96B21 275 aa15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 BOD1Q96IK1 185 aa15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 NAA11Q9BSU3 229 aaPredicted RBP15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 SF3B5Q9BWJ5 86 aaKnown RBP15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 SLCO5A1Q9H2Y9 848 aa15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 MANSC1Q9H8J5 431 aa15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 THUMPD1Q9NXG2 353 aaKnown RBP15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 P2RX2Q9UBL9 471 aa15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 DCTN4Q9UJW0 460 aa15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 DNHD1Q96M86 4753 aa15.15■□□□□ 0.02
VPS9D1-203ENST00000563798 CIB4A0PJX0 185 aa15.14■□□□□ 0.01
VPS9D1-203ENST00000563798 ABCD4O14678 606 aa15.14■□□□□ 0.01
VPS9D1-203ENST00000563798 KLF11O14901 512 aa15.14■□□□□ 0.01
VPS9D1-203ENST00000563798 RAD51DO75771 328 aa15.14■□□□□ 0.01
VPS9D1-203ENST00000563798 IGHV3-9P01782 118 aa15.14■□□□□ 0.01
VPS9D1-203ENST00000563798 IGHV4-39P01824 125 aa15.14■□□□□ 0.01
VPS9D1-203ENST00000563798 ITGA5P08648 1049 aa15.14■□□□□ 0.01
VPS9D1-203ENST00000563798 CCNA2P20248 432 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms