RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ANKRD34AQ69YU3 496 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 ACSM5Q6NUN0 579 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 SLC30A6Q6NXT4 461 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 JMJD6Q6NYC1 403 aaPredicted RBP6.88□□□□□ -1.31
VPS39-204ENST00000561818 KIRREL2Q6UWL6 708 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 ISLR2Q6UXK2 745 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 ZNF517Q6ZMY9 492 aaPredicted RBP6.88□□□□□ -1.31
VPS39-204ENST00000561818 ZNF574Q6ZN55 896 aaPredicted RBP6.88□□□□□ -1.31
VPS39-204ENST00000561818 DGAT2L6Q6ZPD8 337 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 SLC16A12Q6ZSM3 486 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 NANOGNBQ7Z5D8 188 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 SLCO6A1Q86UG4 719 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 KIF18BQ86Y91 864 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 ARMC10Q8N2F6 343 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 MS4A15Q8N5U1 240 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 ESX1Q8N693 406 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 METTL27Q8N6F8 245 aaPredicted RBP6.88□□□□□ -1.31
VPS39-204ENST00000561818 BMPERQ8N8U9 685 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 TMEM105Q8N8V8 129 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 ZSCAN1Q8NBB4 408 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 ADPRHL1Q8NDY3 354 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 OR52I1Q8NGK6 324 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 OR2T4Q8NH00 348 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 FGF11Q92914 225 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 EFHD2Q96C19 240 aaPredicted RBP6.88□□□□□ -1.31
VPS39-204ENST00000561818 MRGPRX4Q96LA9 322 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 SGCZQ96LD1 299 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 SAMD8Q96LT4 415 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 TAAR9Q96RI9 348 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 CNN2Q99439 309 aaKnown RBP6.88□□□□□ -1.31
VPS39-204ENST00000561818 SPSB2Q99619 263 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 MRI1Q9BV20 369 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 NUDT9Q9BW91 350 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 TAPBPLQ9BX59 468 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 GPR87Q9BY21 358 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 DEFB126Q9BYW3 111 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 ULBP3Q9BZM4 244 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 ZNF700Q9H0M5 742 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 DCSTAMPQ9H295 470 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 MMP25Q9NPA2 562 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 NRIP3Q9NQ35 241 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 PRDM6Q9NQX0 595 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 CTPS2Q9NRF8 586 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 SACM1LQ9NTJ5 587 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 SLC39A1Q9NY26 324 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 TAS2R10Q9NYW0 307 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 ABI3Q9P2A4 366 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 CTSFQ9UBX1 484 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 ADAM30Q9UKF2 790 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 ATXN7L1Q9ULK2 861 aaPredicted RBP6.88□□□□□ -1.31
VPS39-204ENST00000561818 YARS2Q9Y2Z4 477 aaKnown RBP6.88□□□□□ -1.31
VPS39-204ENST00000561818 PI4KAP42356 2102 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 PCDH15Q96QU1 1955 aa6.88□□□□□ -1.31
VPS39-204ENST00000561818 A0A075B6Q4 140 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 CCDC187A0A096LP49 1063 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 TRBV11-1A0A0K0K1C0 115 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 A0A1W2PPW3 197 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 GJE1A6NN92 205 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 ZNF670-ZNF695F2Z2N8 137 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 CDC42EP2O14613 210 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 GPRIN2O60269 458 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 ICOSLGO75144 302 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 RFPL3O75679 317 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 ZNF432O94892 652 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 SNX4O95219 450 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 OR6A2O95222 327 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 ATE1O95260 518 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 NUDT14O95848 222 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 PTHP01270 115 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 THY1P04216 161 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 CTSBP07858 339 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 TACSTD2P09758 323 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 FBXO45P0C2W1 286 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 ZNF806P0C7X5 589 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 JMJD7P0C870 316 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 PRG2P13727 222 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 FUT1P19526 365 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 CRABP1P29762 137 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 AVPR2P30518 371 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 DAP3P51398 398 aaKnown RBP6.87□□□□□ -1.31
VPS39-204ENST00000561818 RORCP51449 518 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 RPS7P62081 194 aaKnown RBP6.87□□□□□ -1.31
VPS39-204ENST00000561818 RPS15P62841 145 aaKnown RBP6.87□□□□□ -1.31
VPS39-204ENST00000561818 SNRPNP63162 240 aaKnown RBP6.87□□□□□ -1.31
VPS39-204ENST00000561818 SGCBQ16585 318 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 ZNF74Q16587 644 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 NTRK2Q16620 822 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 ALG10Q5BKT4 473 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 SLC25A53Q5H9E4 307 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 SPANXN2Q5MJ10 180 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 CLEC12AQ5QGZ9 265 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 SLC6A19Q695T7 634 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 WDR88Q6ZMY6 472 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 TRILQ7L0X0 811 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 APCDD1LQ8NCL9 501 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 NFAM1Q8NET5 270 aaPredicted RBP6.87□□□□□ -1.31
VPS39-204ENST00000561818 OR4N2Q8NGD1 307 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 MOSPD2Q8NHP6 518 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 DYNC2LI1Q8TCX1 351 aa6.87□□□□□ -1.31
VPS39-204ENST00000561818 RHBDD1Q8TEB9 315 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms