RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SYNGR4O95473 234 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 CST1P01037 141 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 SEMG1P04279 462 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 TPOP07202 933 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 ZNF708P17019 499 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 CCNA2P20248 432 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 GTF2E2P29084 291 aaKnown RBP8.32□□□□□ -1.08
LDLR-210ENST00000559340 RRM2P31350 389 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 SFTPDP35247 375 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 MAGEA2P43356 314 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 YAP1P46937 504 aaKnown RBP8.32□□□□□ -1.08
LDLR-210ENST00000559340 STARP49675 285 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 LHX2P50458 406 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 CARD18P57730 90 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 SLC35A1P78382 337 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 VLDLRP98155 873 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 SPIBQ01892 262 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 TAF11Q15544 211 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 GXYLT1Q4G148 440 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 PRR30Q53SZ7 412 aaPredicted RBP8.32□□□□□ -1.08
LDLR-210ENST00000559340 DCST1Q5T197 706 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 HBMQ6B0K9 141 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 TMEM211Q6ICI0 200 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 OR2T5Q6IEZ7 315 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 LINC00114Q6XXX2 140 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 TMPPEQ6ZT21 453 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 PAPD5Q8NDF8 572 aaKnown RBP8.32□□□□□ -1.08
LDLR-210ENST00000559340 OR2T29Q8NH02 315 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 OR2V1Q8NHB1 315 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 FAM57AQ8TBR7 257 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 WDYHV1Q96HA8 205 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 OR5B2Q96R09 309 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 WFDC6Q9BQY6 131 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 NAA11Q9BSU3 229 aaPredicted RBP8.32□□□□□ -1.08
LDLR-210ENST00000559340 PRR14Q9BWN1 585 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 PRRG4Q9BZD6 226 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 PRDM14Q9GZV8 571 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 TP63Q9H3D4 680 aaPredicted RBP8.32□□□□□ -1.08
LDLR-210ENST00000559340 REEP1Q9H902 201 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 NMNAT1Q9HAN9 279 aaPredicted RBP8.32□□□□□ -1.08
LDLR-210ENST00000559340 ARMC1Q9NVT9 282 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 ALKBH4Q9NXW9 302 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 SPRR3Q9UBC9 169 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 MCTS1Q9ULC4 181 aaKnown RBP8.32□□□□□ -1.08
LDLR-210ENST00000559340 SLC7A7Q9UM01 511 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 MED31Q9Y3C7 131 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 AP4S1Q9Y587 144 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 TRAV36DV7A0A075B6V5 113 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 A0A1B0GUH1 482 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 A0A1W2PRQ8 180 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 SHISA8B8ZZ34 492 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 SULT2B1O00204 365 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 EIF1AYO14602 144 aaKnown RBP8.31□□□□□ -1.08
LDLR-210ENST00000559340 SEC14L5O43304 696 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 EFNA2O43921 213 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 EIF1BO60739 113 aaKnown RBP8.31□□□□□ -1.08
LDLR-210ENST00000559340 SLC19A2O60779 497 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 PMS2P2O95744 297 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 IGF2P01344 180 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 HIST1H2ABP04908 130 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 FCGR2AP12318 317 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 FASP25445 335 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 IDUAP35475 653 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 CLDN18P56856 261 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 NUP107P57740 925 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 OR2B6P58173 313 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 RAC3P60763 192 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 FOXK1P85037 733 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 TLE1Q04724 770 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 SRYQ05066 204 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 CCNIQ14094 377 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 DGCR6Q14129 220 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 KPNB1Q14974 876 aaKnown RBP8.31□□□□□ -1.08
LDLR-210ENST00000559340 EEF1A1P5Q5VTE0 462 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 C1orf140Q5VVS0 124 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 ZNF585AQ6P3V2 769 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 ZNF730Q6ZMV8 503 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 Q6ZPB1 254 aaPredicted RBP8.31□□□□□ -1.08
LDLR-210ENST00000559340 HIST3H2AQ7L7L0 130 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 P4HA3Q7Z4N8 544 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 UBQLNLQ8IYU4 475 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 C10orf53Q8N6V4 93 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 FAM86B1Q8N7N1 296 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 MFSD8Q8NHS3 518 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 TMEM239Q8WW34 195 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 ACOT11Q8WXI4 607 aaPredicted RBP8.31□□□□□ -1.08
LDLR-210ENST00000559340 OSTF1Q92882 214 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 HIST1H2ACQ93077 130 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 CPNE4Q96A23 557 aaPredicted RBP8.31□□□□□ -1.08
LDLR-210ENST00000559340 MIB2Q96AX9 1013 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 KLHDC3Q9BQ90 382 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 BDH2Q9BUT1 245 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 NDEL1Q9GZM8 345 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 DENND2DQ9H6A0 471 aaPredicted RBP8.31□□□□□ -1.08
LDLR-210ENST00000559340 CALHM2Q9HA72 323 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 DNAJB9Q9UBS3 223 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 TMEM5Q9Y2B1 443 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 ZNF835Q9Y2P0 537 aa8.31□□□□□ -1.08
LDLR-210ENST00000559340 HIVEP3Q5T1R4 2406 aa8.3□□□□□ -1.08
LDLR-210ENST00000559340 A0A0J9YW62 118 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms