RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 CCDC182A6NF36 153 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 PGCP20142 388 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 PAICSP22234 425 aaKnown RBP24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 ACP1P24666 158 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 NOS3P29474 1203 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 EVI2BP34910 448 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 OPRL1P41146 370 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 PRPS1P60891 318 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 RPS4XP62701 263 aaKnown RBP24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 TPBGQ13641 420 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 ISXQ2M1V0 245 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 OR2G6Q5TZ20 316 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 MISPQ8IVT2 679 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 KLHL36Q8N4N3 616 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 OR5M3Q8NGP4 307 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 OR6Q1Q8NGQ2 317 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 OR52N1Q8NH53 320 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 S100ZQ8WXG8 99 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 ERMAPQ96PL5 475 aaPredicted RBP24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 ARHGAP9Q9BRR9 750 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 ZNF649Q9BS31 505 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 WDR54Q9H977 334 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 RXFP3Q9NSD7 469 aa24.03■■□□□ 1.44
CCDC88C-205ENST00000553403 KHNYNO15037 678 aaKnown RBP24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 SLC2A5P22732 501 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 CRMP1Q14194 572 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 ZNF846Q147U1 533 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 SOWAHCQ53LP3 525 aaPredicted RBP24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 LRRC17Q8N6Y2 441 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 KISS1RQ969F8 398 aaPredicted RBP24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 NACC2Q96BF6 587 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 GPX7Q96SL4 187 aaPredicted RBP24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 HCAR1Q9BXC0 346 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 SMOC1Q9H4F8 434 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 PALMDQ9NP74 551 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 ERVK13-1Q9NX77 482 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 METTL15A6NJ78 407 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 ARPC3O15145 178 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 IDH3BO43837 385 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 TSPAN19P0C672 248 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 TACR3P29371 465 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 CRYBB2P43320 205 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 ACSM1Q08AH1 577 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 ZNF74Q16587 644 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 ANKDD1AQ495B1 522 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 LHFPL3Q86UP9 236 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 SLC15A4Q8N697 577 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 OR5L2Q8NGL0 311 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 SECISBP2Q96T21 854 aaKnown RBP24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 ARRDC1-AS1Q9H2J1 176 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 MMP27Q9H306 513 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 RNF167Q9H6Y7 350 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 AKIP1Q9NQ31 210 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 INPP5EQ9NRR6 644 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 PCDHGA5Q9Y5G8 931 aa24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 SPIN1Q9Y657 262 aaPredicted RBP24.02■■□□□ 1.44
CCDC88C-205ENST00000553403 CLDN25C9JDP6 229 aa24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 LRRN3E7EW58 273 aa24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 CDC40O60508 579 aaKnown RBP eCLIP24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 P2RX1P51575 399 aa24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 RPS3AP61247 264 aaKnown RBP24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 CBFBQ13951 182 aa24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 ZNF404Q494X3 552 aa24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 LIPKQ5VXJ0 399 aa24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 ACBD7Q8N6N7 88 aa24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 SIRT6Q8N6T7 355 aa24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 OR51G2Q8NGK0 314 aa24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 MCFD2Q8NI22 146 aa24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 GATAD2BQ8WXI9 593 aa24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 TEAD3Q99594 435 aa24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 WDR12Q9GZL7 423 aaKnown RBP24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 NXF2Q9GZY0 626 aaKnown RBP24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 SIAEQ9HAT2 523 aa24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 HMG20AQ9NP66 347 aa24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 HAO2Q9NYQ3 351 aa24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 SSR3Q9UNL2 185 aa24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 IER3IP1Q9Y5U9 82 aa24.01■■□□□ 1.43
CCDC88C-205ENST00000553403 TRBV11-1A0A0K0K1C0 115 aa24■■□□□ 1.43
CCDC88C-205ENST00000553403 MCIDASD6RGH6 385 aa24■■□□□ 1.43
CCDC88C-205ENST00000553403 NAGAP17050 411 aa24■■□□□ 1.43
CCDC88C-205ENST00000553403 ITPKBP27987 946 aa24■■□□□ 1.43
CCDC88C-205ENST00000553403 SLC26A5P58743 744 aa24■■□□□ 1.43
CCDC88C-205ENST00000553403 KLHL12Q53G59 568 aa24■■□□□ 1.43
CCDC88C-205ENST00000553403 FCRLBQ6BAA4 426 aa24■■□□□ 1.43
CCDC88C-205ENST00000553403 TM9SF4Q92544 642 aa24■■□□□ 1.43
CCDC88C-205ENST00000553403 UFD1Q92890 307 aa24■■□□□ 1.43
CCDC88C-205ENST00000553403 ZNF524Q96C55 264 aa24■■□□□ 1.43
CCDC88C-205ENST00000553403 KLHDC3Q9BQ90 382 aa24■■□□□ 1.43
CCDC88C-205ENST00000553403 MESP1Q9BRJ9 268 aa24■■□□□ 1.43
CCDC88C-205ENST00000553403 NRIP3Q9NQ35 241 aa24■■□□□ 1.43
CCDC88C-205ENST00000553403 GPN3Q9UHW5 284 aaPredicted RBP24■■□□□ 1.43
CCDC88C-205ENST00000553403 CAB39Q9Y376 341 aaPredicted RBP24■■□□□ 1.43
CCDC88C-205ENST00000553403 KLK3P07288 261 aaPredicted RBP23.99■■□□□ 1.43
CCDC88C-205ENST00000553403 GP1BBP13224 206 aa23.99■■□□□ 1.43
CCDC88C-205ENST00000553403 EGR4Q05215 589 aa23.99■■□□□ 1.43
CCDC88C-205ENST00000553403 OR51V1Q9H2C8 321 aa23.99■■□□□ 1.43
CCDC88C-205ENST00000553403 MMP25Q9NPA2 562 aa23.99■■□□□ 1.43
CCDC88C-205ENST00000553403 HIF3AQ9Y2N7 669 aa23.99■■□□□ 1.43
CCDC88C-205ENST00000553403 SLC6A5Q9Y345 797 aa23.99■■□□□ 1.43
CCDC88C-205ENST00000553403 PCDHGB6Q9Y5F9 930 aa23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms