RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 SLC25A28Q96A46 364 aa13.23□□□□□ -0.29
CLSTN3-216ENST00000545663 ELP4Q96EB1 424 aa13.23□□□□□ -0.29
CLSTN3-216ENST00000545663 NSUN5Q96P11 429 aaKnown RBP13.23□□□□□ -0.29
CLSTN3-216ENST00000545663 QRSL1Q9H0R6 528 aaKnown RBP13.23□□□□□ -0.29
CLSTN3-216ENST00000545663 ELOVL6Q9H5J4 265 aa13.23□□□□□ -0.29
CLSTN3-216ENST00000545663 ZNF665Q9H7R5 613 aa13.23□□□□□ -0.29
CLSTN3-216ENST00000545663 C3orf14Q9HBI5 128 aa13.23□□□□□ -0.29
CLSTN3-216ENST00000545663 DCTN4Q9UJW0 460 aa13.23□□□□□ -0.29
CLSTN3-216ENST00000545663 CARD8Q9Y2G2 431 aa13.23□□□□□ -0.29
CLSTN3-216ENST00000545663 GPC6Q9Y625 555 aaPredicted RBP13.23□□□□□ -0.29
CLSTN3-216ENST00000545663 G3V4G9 280 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 J3QLI3 93 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 DYNC1I1O14576 645 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 SCAMP2O15127 329 aaKnown RBP13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 CECR9P0C854 216 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 HPGDP15428 266 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 CHN1P15882 459 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 ATP5F1P24539 256 aaPredicted RBP13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 CCNG1P51959 295 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 TUBA1BP68363 451 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 TUBA4AP68366 448 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 SELENBP1Q13228 472 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 BEAN1Q3B7T3 259 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 TSPO2Q5TGU0 170 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 AGBL2Q5U5Z8 902 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 BRICD5Q6PL45 260 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 KLHL24Q6TFL4 600 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 TUBA1AQ71U36 451 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 MYPOPQ86VE0 399 aaPredicted RBP13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 CCDC103Q8IW40 242 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 FAM110DQ8TAY7 271 aaPredicted RBP13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 C16orf78Q8WTQ4 265 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 JADE3Q92613 823 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 OTUB1Q96FW1 271 aaPredicted RBP13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 GLIPR2Q9H4G4 154 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 TMBIM4Q9HC24 238 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 HHATLQ9HCP6 504 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 UBQLN4Q9NRR5 601 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 UPB1Q9UBR1 384 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 MMP24Q9Y5R2 645 aa13.22□□□□□ -0.29
CLSTN3-216ENST00000545663 ARHGAP32A7KAX9 2087 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 NR5A2O00482 541 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 PPP6CO00743 305 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 SCDO00767 359 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 TM9SF1O15321 606 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 KCNK2O95069 426 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 ANPEPP15144 967 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 MAP3K8P41279 467 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 SLC18A1P54219 525 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 PRKAA2P54646 552 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 PDK3Q15120 406 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 CCNJQ5T5M9 372 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 CASP12Q6UXS9 341 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 RPS27LQ71UM5 84 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 SPATC1Q76KD6 591 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 MTDHQ86UE4 582 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 MISPQ8IVT2 679 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 C4orf33Q8N1A6 199 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 PHOSPHO1Q8TCT1 267 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 ZMAT3Q9HA38 289 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 TMEM216Q9P0N5 145 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 CPSF2Q9P2I0 782 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 STK38LQ9Y2H1 464 aa13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 SOX21Q9Y651 276 aaPredicted RBP13.21□□□□□ -0.29
CLSTN3-216ENST00000545663 GNG14A0A1W2PPG7 69 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 HMGB1P1B2RPK0 211 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 H3BQF6 201 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 SULT2B1O00204 365 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 PCDH7O60245 1069 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 DEAF1O75398 565 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 SKAP2O75563 359 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 NKX2-2O95096 273 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 CELA3BP08861 270 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 MYL2P10916 166 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 ACHEP22303 614 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 TMEM33P57088 247 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 TGFBR3Q03167 851 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 MSMPQ1L6U9 139 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 HSP90B2PQ58FF3 399 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 AVPI1Q5T686 147 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 TMPPEQ6ZT21 453 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 CCDC63Q8NA47 563 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 NUP37Q8NFH4 326 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 OR4F15Q8NGB8 312 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 OR4F6Q8NGB9 312 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 RFWD2Q8NHY2 731 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 SELENOMQ8WWX9 145 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 RDH5Q92781 318 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 ZNF442Q9H7R0 627 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 REV1Q9UBZ9 1251 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 RYR2Q92736 4967 aa13.2□□□□□ -0.3
CLSTN3-216ENST00000545663 A0A1W2PQD3 144 aa13.19□□□□□ -0.3
CLSTN3-216ENST00000545663 TIMM23O14925 209 aa13.19□□□□□ -0.3
CLSTN3-216ENST00000545663 PLIN3O60664 434 aa13.19□□□□□ -0.3
CLSTN3-216ENST00000545663 PROCP04070 461 aa13.19□□□□□ -0.3
CLSTN3-216ENST00000545663 ACP2P11117 423 aa13.19□□□□□ -0.3
CLSTN3-216ENST00000545663 CPA3P15088 417 aa13.19□□□□□ -0.3
CLSTN3-216ENST00000545663 GPC1P35052 558 aa13.19□□□□□ -0.3
CLSTN3-216ENST00000545663 P2RX1P51575 399 aa13.19□□□□□ -0.3
CLSTN3-216ENST00000545663 SEC24CP53992 1094 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms