RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CCDC32Q9BV29 185 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 LMAN1LQ9HAT1 526 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 ADGRL4Q9HBW9 690 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 COPS3Q9UNS2 423 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 SLC6A5Q9Y345 797 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 A0A0B4J2E0 115 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 A0A1B0GX12 115 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 TRDV1A0A1B0GX56 115 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 IDH3BO43837 385 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 SOX2P48431 317 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 KIAA0895LQ68EN5 471 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 MED25Q71SY5 747 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 OR51Q1Q8NH59 317 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 ZNF486Q96H40 463 aaPredicted RBP15.53■□□□□ 0.08
USP28-208ENST00000540438 OR10A5Q9H207 317 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 GALNT9Q9HCQ5 603 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 LYRM4Q9HD34 91 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 RPRD1BQ9NQG5 326 aaKnown RBP15.53■□□□□ 0.08
USP28-208ENST00000540438 ENAMQ9NRM1 1142 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 FAM186AA6NE01 2351 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 C11orf98E9PRG8 122 aa15.52■□□□□ 0.08
USP28-208ENST00000540438 MLLT3P42568 568 aaPredicted RBP15.52■□□□□ 0.08
USP28-208ENST00000540438 CENPAP49450 140 aa15.52■□□□□ 0.08
USP28-208ENST00000540438 RAB38P57729 211 aa15.52■□□□□ 0.08
USP28-208ENST00000540438 MRPS21P82921 87 aaKnown RBP15.52■□□□□ 0.08
USP28-208ENST00000540438 ZP2Q05996 745 aa15.52■□□□□ 0.08
USP28-208ENST00000540438 SLC25A30Q5SVS4 291 aa15.52■□□□□ 0.08
USP28-208ENST00000540438 RDH10Q8IZV5 341 aa15.52■□□□□ 0.08
USP28-208ENST00000540438 KDM8Q8N371 416 aa15.52■□□□□ 0.08
USP28-208ENST00000540438 LNX2Q8N448 690 aa15.52■□□□□ 0.08
USP28-208ENST00000540438 OR6C68A6NDL8 312 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 C17orf105B2RV13 164 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 TNFRSF10CO14798 259 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 RCBTB2O95199 551 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 TOMM34Q15785 309 aaPredicted RBP15.52■□□□□ 0.07
USP28-208ENST00000540438 ZFP69Q49AA0 526 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 ACSM3Q53FZ2 586 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 PRAMEF8Q5VWM4 474 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 PRAMEF7Q5VXH5 474 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 PRR23CQ6ZRP0 262 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 BCORP1Q8N888 145 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 BEST4Q8NFU0 473 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 TSTD1Q8NFU3 115 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 ABHD4Q8TB40 342 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 CTHRC1Q96CG8 243 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 ST6GAL2Q96JF0 529 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 LMAN2LQ9H0V9 348 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 SEMA6CQ9H3T2 930 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 FSCN3Q9NQT6 498 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 CMC2Q9NRP2 79 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 NKIRAS2Q9NYR9 191 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 POMT2Q9UKY4 750 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 GPR179Q6PRD1 2367 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 AGR2O95994 175 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 PROS1P07225 676 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 ADRB1P08588 477 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 SLC35E2P0CK97 266 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 ITPKBP27987 946 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 OR1D5P58170 312 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 TATDN3Q17R31 274 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 GARNL3Q5VVW2 1013 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 XKRXQ6PP77 449 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 GPR135Q8IZ08 494 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 GJD3Q8N144 294 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 SNX33Q8WV41 574 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 DNAJA4Q8WW22 397 aaPredicted RBP15.52■□□□□ 0.07
USP28-208ENST00000540438 NDC1Q9BTX1 674 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 SLC22A4Q9H015 551 aa15.52■□□□□ 0.07
USP28-208ENST00000540438 PRR32B1ATL7 298 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 DCTN6O00399 190 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 IGHA1P01876 353 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 OPN1LWP04000 364 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 THBS1P07996 1170 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 RNH1P13489 461 aaKnown RBP15.51■□□□□ 0.07
USP28-208ENST00000540438 ZNF3P17036 446 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 PLET1Q6UQ28 207 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 SAMD14Q8IZD0 417 aaPredicted RBP15.51■□□□□ 0.07
USP28-208ENST00000540438 UPRTQ96BW1 309 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 SLC25A36Q96CQ1 311 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 HSPA12BQ96MM6 686 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 VSTM2LQ96N03 204 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 DERL3Q96Q80 235 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 NXF5Q9H1B4 397 aaKnown RBP15.51■□□□□ 0.07
USP28-208ENST00000540438 SYNDIG1Q9H7V2 258 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 SCML1Q9UN30 329 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 EXOGQ9Y2C4 368 aaKnown RBP15.51■□□□□ 0.07
USP28-208ENST00000540438 ARID1AO14497 2285 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 TEX13CA0A0J9YWL9 993 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 AGFG1P52594 562 aaKnown RBP15.51■□□□□ 0.07
USP28-208ENST00000540438 FHL1Q13642 323 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 HES5Q5TA89 166 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 BRIX1Q8TDN6 353 aaKnown RBP15.51■□□□□ 0.07
USP28-208ENST00000540438 ABHD1Q96SE0 405 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 TSPAN10Q9H1Z9 355 aaPredicted RBP15.51■□□□□ 0.07
USP28-208ENST00000540438 KRCC1Q9NPI7 259 aaPredicted RBP15.51■□□□□ 0.07
USP28-208ENST00000540438 MRPS18AQ9NVS2 196 aaKnown RBP15.51■□□□□ 0.07
USP28-208ENST00000540438 NTMQ9P121 344 aa15.51■□□□□ 0.07
USP28-208ENST00000540438 OR6C70A6NIJ9 312 aa15.5■□□□□ 0.07
USP28-208ENST00000540438 TSC22D2O75157 780 aa15.5■□□□□ 0.07
USP28-208ENST00000540438 RGS9O75916 674 aaPredicted RBP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms