RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 RAB8BQ92930 207 aa20.65■□□□□ 0.9
CPSF1-202ENST00000527827 SLC17A5Q9NRA2 495 aa20.65■□□□□ 0.9
CPSF1-202ENST00000527827 TRAPPC4Q9Y296 219 aa20.65■□□□□ 0.9
CPSF1-202ENST00000527827 TLDC2A0PJX2 215 aa20.64■□□□□ 0.89
CPSF1-202ENST00000527827 RNASET2O00584 256 aaKnown RBP20.64■□□□□ 0.89
CPSF1-202ENST00000527827 SCN2BO60939 215 aa20.64■□□□□ 0.89
CPSF1-202ENST00000527827 SPAG7O75391 227 aa20.64■□□□□ 0.89
CPSF1-202ENST00000527827 FKBP2P26885 142 aaKnown RBP20.64■□□□□ 0.89
CPSF1-202ENST00000527827 MAGEA8P43361 318 aa20.64■□□□□ 0.89
CPSF1-202ENST00000527827 OR2B6P58173 313 aa20.64■□□□□ 0.89
CPSF1-202ENST00000527827 EMX2Q04743 252 aa20.64■□□□□ 0.89
CPSF1-202ENST00000527827 TNFAIP8L2Q6P589 184 aaPredicted RBP20.64■□□□□ 0.89
CPSF1-202ENST00000527827 CASP12Q6UXS9 341 aa20.64■□□□□ 0.89
CPSF1-202ENST00000527827 HMGN2P46Q86SG4 172 aa20.64■□□□□ 0.89
CPSF1-202ENST00000527827 TCP10LQ8TDR4 215 aa20.64■□□□□ 0.89
CPSF1-202ENST00000527827 ROPN1LQ96C74 230 aa20.64■□□□□ 0.89
CPSF1-202ENST00000527827 SHARPINQ9H0F6 387 aa20.64■□□□□ 0.89
CPSF1-202ENST00000527827 POLE3Q9NRF9 147 aa20.64■□□□□ 0.89
CPSF1-202ENST00000527827 SLC7A10Q9NS82 523 aa20.64■□□□□ 0.89
CPSF1-202ENST00000527827 ASIC5Q9NY37 505 aa20.64■□□□□ 0.89
CPSF1-202ENST00000527827 DCTN4Q9UJW0 460 aa20.64■□□□□ 0.89
CPSF1-202ENST00000527827 FLVCR1Q9Y5Y0 555 aa20.64■□□□□ 0.89
CPSF1-202ENST00000527827 CLDN24A6NM45 220 aa20.63■□□□□ 0.89
CPSF1-202ENST00000527827 LMX1BO60663 402 aa20.63■□□□□ 0.89
CPSF1-202ENST00000527827 AGR2O95994 175 aa20.63■□□□□ 0.89
CPSF1-202ENST00000527827 CSF3P09919 207 aa20.63■□□□□ 0.89
CPSF1-202ENST00000527827 CCNA2P20248 432 aa20.63■□□□□ 0.89
CPSF1-202ENST00000527827 APOBEC3AP31941 199 aaPredicted RBP20.63■□□□□ 0.89
CPSF1-202ENST00000527827 LSM11P83369 360 aaKnown RBP eCLIP20.63■□□□□ 0.895e-10■□□□□ 8.3
CPSF1-202ENST00000527827 CHRNB3Q05901 458 aa20.63■□□□□ 0.89
CPSF1-202ENST00000527827 MAD2L1Q13257 205 aaPredicted RBP20.63■□□□□ 0.89
CPSF1-202ENST00000527827 C17orf78Q8N4C9 275 aa20.63■□□□□ 0.89
CPSF1-202ENST00000527827 C1orf162Q8NEQ5 155 aaPredicted RBP20.63■□□□□ 0.89
CPSF1-202ENST00000527827 OR8J2Q8NGG1 315 aa20.63■□□□□ 0.89
CPSF1-202ENST00000527827 OR4A15Q8NGL6 344 aa20.63■□□□□ 0.89
CPSF1-202ENST00000527827 FKRPQ9H9S5 495 aa20.63■□□□□ 0.89
CPSF1-202ENST00000527827 EXOSC3Q9NQT5 275 aaKnown RBP20.63■□□□□ 0.89
CPSF1-202ENST00000527827 NOP53Q9NZM5 478 aaKnown RBP20.63■□□□□ 0.89
CPSF1-202ENST00000527827 TMEM181Q9P2C4 612 aa20.63■□□□□ 0.89
CPSF1-202ENST00000527827 AMDHD2Q9Y303 409 aa20.63■□□□□ 0.89
CPSF1-202ENST00000527827 SVEP1Q4LDE5 3571 aa20.63■□□□□ 0.89
CPSF1-202ENST00000527827 PRAMEF27A3QJZ7 478 aa20.62■□□□□ 0.89
CPSF1-202ENST00000527827 VWC2LB2RUY7 222 aa20.62■□□□□ 0.89
CPSF1-202ENST00000527827 ATP6V1G2-DDX39BF2Z307 99 aa20.62■□□□□ 0.89
CPSF1-202ENST00000527827 IMPDH2P12268 514 aa20.62■□□□□ 0.89
CPSF1-202ENST00000527827 BMP4P12644 408 aa20.62■□□□□ 0.89
CPSF1-202ENST00000527827 THBS2P35442 1172 aa20.62■□□□□ 0.89
CPSF1-202ENST00000527827 IDH2P48735 452 aaKnown RBP20.62■□□□□ 0.89
CPSF1-202ENST00000527827 PHC1P78364 1004 aa20.62■□□□□ 0.89
CPSF1-202ENST00000527827 KCNJ10P78508 379 aa20.62■□□□□ 0.89
CPSF1-202ENST00000527827 MST1LQ2TV78 715 aa20.62■□□□□ 0.89
CPSF1-202ENST00000527827 ATAD3BQ5T9A4 648 aa20.62■□□□□ 0.89
CPSF1-202ENST00000527827 TSPO2Q5TGU0 170 aa20.62■□□□□ 0.89
CPSF1-202ENST00000527827 ARFGAP2Q8N6H7 521 aa20.62■□□□□ 0.89
CPSF1-202ENST00000527827 UPB1Q9UBR1 384 aa20.62■□□□□ 0.89
CPSF1-202ENST00000527827 SLC9A8Q9Y2E8 581 aa20.62■□□□□ 0.89
CPSF1-202ENST00000527827 PMF1-BGLAPU3KQ54 211 aa20.62■□□□□ 0.89
CPSF1-202ENST00000527827 TMED7-TICAM2A0A0A6YYA0 188 aa20.61■□□□□ 0.89
CPSF1-202ENST00000527827 AP3D1O14617 1153 aa20.61■□□□□ 0.89
CPSF1-202ENST00000527827 UQCRC2P22695 453 aa20.61■□□□□ 0.89
CPSF1-202ENST00000527827 IGFBP5P24593 272 aa20.61■□□□□ 0.89
CPSF1-202ENST00000527827 SLC17A1Q14916 467 aa20.61■□□□□ 0.89
CPSF1-202ENST00000527827 SWI5Q1ZZU3 235 aa20.61■□□□□ 0.89
CPSF1-202ENST00000527827 SAXO2Q658L1 398 aa20.61■□□□□ 0.89
CPSF1-202ENST00000527827 ANKRD46Q86W74 232 aa20.61■□□□□ 0.89
CPSF1-202ENST00000527827 CNOT9Q92600 299 aaKnown RBP20.61■□□□□ 0.89
CPSF1-202ENST00000527827 ST6GALNAC1Q9NSC7 600 aaPredicted RBP20.61■□□□□ 0.89
CPSF1-202ENST00000527827 PARPBPQ9NWS1 579 aa20.61■□□□□ 0.89
CPSF1-202ENST00000527827 OSGIN1Q9UJX0 560 aa20.61■□□□□ 0.89
CPSF1-202ENST00000527827 PCDHGB4Q9UN71 923 aa20.61■□□□□ 0.89
CPSF1-202ENST00000527827 TMED7Q9Y3B3 224 aa20.61■□□□□ 0.89
CPSF1-202ENST00000527827 TMEM72A0PK05 275 aa20.6■□□□□ 0.89
CPSF1-202ENST00000527827 SLC35F4A4IF30 521 aa20.6■□□□□ 0.89
CPSF1-202ENST00000527827 EIF1BO60739 113 aaKnown RBP20.6■□□□□ 0.89
CPSF1-202ENST00000527827 CPSF4O95639 269 aaKnown RBP20.6■□□□□ 0.89
CPSF1-202ENST00000527827 GZMKP49863 264 aa20.6■□□□□ 0.89
CPSF1-202ENST00000527827 SLC35A1P78382 337 aa20.6■□□□□ 0.89
CPSF1-202ENST00000527827 SMU1Q2TAY7 513 aa20.6■□□□□ 0.89
CPSF1-202ENST00000527827 MOKQ9UQ07 419 aa20.6■□□□□ 0.89
CPSF1-202ENST00000527827 ANK2Q01484 3957 aa20.6■□□□□ 0.89
CPSF1-202ENST00000527827 PRSS51A0A1B0GVH4 220 aa20.59■□□□□ 0.89
CPSF1-202ENST00000527827 ZNF208O43345 1280 aa20.59■□□□□ 0.89
CPSF1-202ENST00000527827 C1QCP02747 245 aa20.59■□□□□ 0.89
CPSF1-202ENST00000527827 BPGMP07738 259 aa20.59■□□□□ 0.89
CPSF1-202ENST00000527827 HTR3AP46098 478 aa20.59■□□□□ 0.89
CPSF1-202ENST00000527827 SRSF2Q01130 221 aaKnown RBP20.59■□□□□ 0.89
CPSF1-202ENST00000527827 TGFBR3Q03167 851 aa20.59■□□□□ 0.89
CPSF1-202ENST00000527827 IL17RELQ6ZVW7 336 aa20.59■□□□□ 0.89
CPSF1-202ENST00000527827 RIBC1Q8N443 379 aaPredicted RBP20.59■□□□□ 0.89
CPSF1-202ENST00000527827 FBXO17Q96EF6 278 aa20.59■□□□□ 0.89
CPSF1-202ENST00000527827 NEURL3Q96EH8 262 aa20.59■□□□□ 0.89
CPSF1-202ENST00000527827 SORCS2Q96PQ0 1159 aa20.59■□□□□ 0.89
CPSF1-202ENST00000527827 NAA11Q9BSU3 229 aaPredicted RBP20.59■□□□□ 0.89
CPSF1-202ENST00000527827 C19orf24Q9BVV8 132 aa20.59■□□□□ 0.89
CPSF1-202ENST00000527827 PRR14Q9BWN1 585 aa20.59■□□□□ 0.89
CPSF1-202ENST00000527827 AKTIPQ9H8T0 292 aa20.59■□□□□ 0.89
CPSF1-202ENST00000527827 ZC3H12DA2A288 527 aaKnown RBP20.58■□□□□ 0.89
CPSF1-202ENST00000527827 CREB1P16220 341 aa20.58■□□□□ 0.89
CPSF1-202ENST00000527827 SRD5A1P18405 259 aa20.58■□□□□ 0.89
CPSF1-202ENST00000527827 TACR3P29371 465 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms