RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	CEACAM8	P31997	349 aa	Predicted RBP	7.87	□□□□□ -1.15
USP4-213	ENST00000488520	IFNA8	P32881	189 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	ZNF136	P52737	540 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	MVD	P53602	400 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	COPZ1	P61923	177 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	KCNJ10	P78508	379 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	GABPB1	Q06547	395 aa	Predicted RBP	7.87	□□□□□ -1.15
USP4-213	ENST00000488520	BNIP1	Q12981	228 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	ZNF141	Q15928	474 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	KLHL26	Q53HC5	615 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	EIPR1	Q53HC9	387 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	PDZK1	Q5T2W1	519 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	GLYAT	Q6IB77	296 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	OR5M10	Q6IEU7	315 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	TYW3	Q6IPR3	259 aa	Known RBP	7.87	□□□□□ -1.15
USP4-213	ENST00000488520	POMZP3	Q6PJE2	187 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	LRFN4	Q6PJG9	635 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	PLCZ1	Q86YW0	608 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	ARMC8	Q8IUR7	673 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	CMIP	Q8IY22	773 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	ZNF440	Q8IYI8	595 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	TMCO5A	Q8N6Q1	288 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	GATS	Q8NAP1	163 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	RBM15B	Q8NDT2	890 aa	Known RBP	7.87	□□□□□ -1.15
USP4-213	ENST00000488520	TOR1AIP2	Q8NFQ8	470 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	B4GALNT2	Q8NHY0	566 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	NEIL3	Q8TAT5	605 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	FIG4	Q92562	907 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	FAM162A	Q96A26	154 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	PLPPR2	Q96GM1	343 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	TMEM41A	Q96HV5	264 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	LRGUK	Q96M69	825 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	ZNF583	Q96ND8	569 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	THTPA	Q9BU02	230 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	DSN1	Q9H410	356 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	ZNF703	Q9H7S9	590 aa	Predicted RBP	7.87	□□□□□ -1.15
USP4-213	ENST00000488520	EVA1A	Q9H8M9	152 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	PROK2	Q9HC23	129 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	BCL2L10	Q9HD36	194 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	ADPRHL2	Q9NX46	363 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	7.87	□□□□□ -1.15
USP4-213	ENST00000488520	TMEM181	Q9P2C4	612 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	DKKL1	Q9UK85	242 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	CNOT11	Q9UKZ1	510 aa	Known RBP	7.87	□□□□□ -1.15
USP4-213	ENST00000488520	PRPF19	Q9UMS4	504 aa	Known RBP	7.87	□□□□□ -1.15
USP4-213	ENST00000488520	CAMK2A	Q9UQM7	478 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	WIF1	Q9Y5W5	379 aa		7.87	□□□□□ -1.15
USP4-213	ENST00000488520	FBN1	P35555	2871 aa	Known RBP	7.87	□□□□□ -1.15
USP4-213	ENST00000488520	USF3	Q68DE3	2245 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	SON	P18583	2426 aa	Known RBP	7.86	□□□□□ -1.15
USP4-213	ENST00000488520		A0A1W2PPR1	153 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	PRAMEF27	A3QJZ7	478 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	AGAP5	A6NIR3	686 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520		H7C1Q1	480 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	CXCR6	O00574	342 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	NME4	O00746	187 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	GMFG	O60234	142 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	KIAA0513	O60268	411 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	DNAJC8	O75937	253 aa	Predicted RBP	7.86	□□□□□ -1.15
USP4-213	ENST00000488520	EPPIN	O95925	133 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	C1QC	P02747	245 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	CHRM4	P08173	479 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	PABPC4L	P0CB38	370 aa	Known RBP	7.86	□□□□□ -1.15
USP4-213	ENST00000488520	T-ENOL	P0DO92	83 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	UBL4A	P11441	157 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	PGC	P20142	388 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	ME2	P23368	584 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	AQP1	P29972	269 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	KDELR2	P33947	212 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	PCGF2	P35227	344 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	PGM1	P36871	562 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	GSK3B	P49841	420 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	P2RX1	P51575	399 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	CCR4	P51679	360 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	ZNF41	P51814	821 aa	Predicted RBP	7.86	□□□□□ -1.15
USP4-213	ENST00000488520	DSCR4	P56555	118 aa	Predicted RBP	7.86	□□□□□ -1.15
USP4-213	ENST00000488520	CBFB	Q13951	182 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	FBXL19-AS1	Q494R0	122 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	ACSF3	Q4G176	576 aa	Predicted RBP	7.86	□□□□□ -1.15
USP4-213	ENST00000488520	WIPI1	Q5MNZ9	446 aa	Predicted RBP	7.86	□□□□□ -1.15
USP4-213	ENST00000488520	BICRAL	Q6AI39	1079 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	TIGD3	Q6B0B8	471 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	C6orf89	Q6UWU4	347 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	FRRS1	Q6ZNA5	592 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	FKBP9P1	Q75LS8	142 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	ZNF550	Q7Z398	422 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	NET1	Q7Z628	596 aa	Predicted RBP	7.86	□□□□□ -1.15
USP4-213	ENST00000488520	CALHM3	Q86XJ0	350 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	KIF18B	Q86Y91	864 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	P3H2	Q8IVL5	708 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	RNF148	Q8N7C7	305 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	OR14L1P	Q8NHC6	308 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	ZNF563	Q8TA94	476 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	PROX1	Q92786	737 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	MISP3	Q96FF7	219 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	SH3YL1	Q96HL8	342 aa	Predicted RBP	7.86	□□□□□ -1.15
USP4-213	ENST00000488520	GNRHR2	Q96P88	292 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	TRIB1	Q96RU8	372 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	LAT2	Q9GZY6	243 aa		7.86	□□□□□ -1.15
USP4-213	ENST00000488520	SLC38A1	Q9H2H9	487 aa		7.86	□□□□□ -1.15

Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms