RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 MAGEA8P43361 318 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 POLR2HP52434 150 aaKnown RBP14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 OR2B6P58173 313 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 H3F3AP84243 136 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 TNK1Q13470 666 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 ATRQ13535 2644 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 GNA13Q14344 377 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 PGGHGQ32M88 737 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 COX20Q5RI15 118 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 UBE2J2Q8N2K1 259 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 GTPBP3Q969Y2 492 aaKnown RBP14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 DNAJA3Q96EY1 480 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 NPAP1Q9NZP6 1156 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 OSGIN1Q9UJX0 560 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 TMEM72A0PK05 275 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 KIAA1324LA8MWY0 1029 aaPredicted RBP14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 SHISA9B4DS77 424 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 SLCO1B7G3V0H7 640 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 RAMP1O60894 148 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 RAD51DO75771 328 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 KRT75O95678 551 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 IGHV3-9P01782 118 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 DBIP07108 87 aaKnown RBP14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 IL7RP16871 459 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 PCSK6P29122 969 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 NTF4P34130 210 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 CDKN1AP38936 164 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 SLC1A3P43003 542 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 MAP2K6P52564 334 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 SLC35A1P78382 337 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 EPS8Q12929 822 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 CLEC12BQ2HXU8 276 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 MRPL2Q5T653 305 aaKnown RBP14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 PRIMA1Q86XR5 153 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 CCDC103Q8IW40 242 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 PNPT1Q8TCS8 783 aaKnown RBP14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 DDIT4LQ96D03 193 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 GRIP2Q9C0E4 1043 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 ASB6Q9NWX5 421 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 TAS2R16Q9NYV7 291 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 CISD1Q9NZ45 108 aaKnown RBP14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 MALT1Q9UDY8 824 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 CADP27708 2225 aa14.61□□□□□ -0.07
CCDC28B-204ENST00000469003 CIB4A0PJX0 185 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 CFAP73A6NFT4 308 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 CCT8L1PA6NM43 557 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 RFXANKO14593 260 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 EIF1BO60739 113 aaKnown RBP14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 MRPL33O75394 65 aaKnown RBP14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 IL6P05231 212 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 THBS1P07996 1170 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 KITP10721 976 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 IMPDH2P12268 514 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 IDO1P14902 403 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 UQCRBP14927 111 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 TACR3P29371 465 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 IDUAP35475 653 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 SLC18A1P54219 525 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 CDH11P55287 796 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 FAPQ12884 760 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 VEZF1Q14119 521 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 MAPK11Q15759 364 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 PDCD4Q53EL6 469 aaKnown RBP14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 ATG16L1Q676U5 607 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 DTX2Q86UW9 622 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 PEX5LQ8IYB4 626 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 ZNF440Q8IYI8 595 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 MGARPQ8TDB4 240 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 RADILQ96JH8 1075 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 MAELQ96JY0 434 aaKnown RBP14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 NAA11Q9BSU3 229 aaPredicted RBP14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 TRAF4Q9BUZ4 470 aaPredicted RBP14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 ALG2Q9H553 416 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 FAIMQ9NVQ4 179 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 PRDM4Q9UKN5 801 aa14.6□□□□□ -0.07
CCDC28B-204ENST00000469003 ABCD4O14678 606 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 SLC22A3O75751 556 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 CD8AP01732 235 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 MVDP53602 400 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 PPP2R2BQ00005 443 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 GSTA3Q16772 222 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 NXNQ6DKJ4 435 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 OR7E24Q6IFN5 339 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 TMEM108Q6UXF1 575 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 OR52N5Q8NH56 324 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 SPATA3Q8NHX4 192 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 ADAM19Q9H013 955 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 SLCO5A1Q9H2Y9 848 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 SLC6A13Q9NSD5 602 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 CALML5Q9NZT1 146 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 P2RX2Q9UBL9 471 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 MGAT4BQ9UQ53 548 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 SLC9A8Q9Y2E8 581 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 FLVCR1Q9Y5Y0 555 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 SLC25A15Q9Y619 301 aa14.59□□□□□ -0.07
CCDC28B-204ENST00000469003 ZC3H12DA2A288 527 aaKnown RBP14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 CDHR4A6H8M9 788 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 INAFM1C9JVW0 142 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 PDLIM1O00151 329 aa14.58□□□□□ -0.08
CCDC28B-204ENST00000469003 IGHV4-39P01824 125 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms