RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 IGF2P01344 180 aa10.42□□□□□ -0.74
SCN9A-204ENST00000452182 MT-ND1P03886 318 aa10.42□□□□□ -0.74
SCN9A-204ENST00000452182 STARP49675 285 aa10.42□□□□□ -0.74
SCN9A-204ENST00000452182 ERFP50548 548 aa10.42□□□□□ -0.74
SCN9A-204ENST00000452182 EGR4Q05215 589 aa10.42□□□□□ -0.74
SCN9A-204ENST00000452182 RBPJQ06330 500 aa10.42□□□□□ -0.74
SCN9A-204ENST00000452182 CTU2Q2VPK5 515 aaKnown RBP10.42□□□□□ -0.74
SCN9A-204ENST00000452182 POMZP3Q6PJE2 187 aa10.42□□□□□ -0.74
SCN9A-204ENST00000452182 GFRALQ6UXV0 394 aa10.42□□□□□ -0.74
SCN9A-204ENST00000452182 WDR88Q6ZMY6 472 aa10.42□□□□□ -0.74
SCN9A-204ENST00000452182 NKAIN4Q8IVV8 208 aa10.42□□□□□ -0.74
SCN9A-204ENST00000452182 MEIOBQ8N635 442 aa10.42□□□□□ -0.74
SCN9A-204ENST00000452182 FAM57AQ8TBR7 257 aa10.42□□□□□ -0.74
SCN9A-204ENST00000452182 KLHL15Q96M94 604 aa10.42□□□□□ -0.74
SCN9A-204ENST00000452182 PAQR5Q9NXK6 330 aaPredicted RBP10.42□□□□□ -0.74
SCN9A-204ENST00000452182 ZNF835Q9Y2P0 537 aa10.42□□□□□ -0.74
SCN9A-204ENST00000452182 HDGFL3Q9Y3E1 203 aa10.42□□□□□ -0.74
SCN9A-204ENST00000452182 IGKV1D-42A0A075B6H8 117 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 EIF4E1BA6NMX2 242 aaKnown RBP10.41□□□□□ -0.74
SCN9A-204ENST00000452182 NPIPA2E9PIF3 369 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 NPIPA3F8WFD2 350 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 FZD7O75084 574 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 ENTPD5O75356 428 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 GADD45GO95257 159 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 CST1P01037 141 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 PRB1P04280 392 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 FCGR1AP12314 374 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 RRM2P31350 389 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 LIMS1P48059 325 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 SUCLG1P53597 346 aaKnown RBP10.41□□□□□ -0.74
SCN9A-204ENST00000452182 CLDN15P56746 228 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 CLDN20P56880 219 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 TMEM176BQ3YBM2 270 aaPredicted RBP10.41□□□□□ -0.74
SCN9A-204ENST00000452182 WLSQ5T9L3 541 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 C1orf140Q5VVS0 124 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 OR2T5Q6IEZ7 315 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 TTC33Q6PID6 262 aaPredicted RBP10.41□□□□□ -0.74
SCN9A-204ENST00000452182 Q6ZPB1 254 aaPredicted RBP10.41□□□□□ -0.74
SCN9A-204ENST00000452182 RNF113BQ8IZP6 322 aaKnown RBP10.41□□□□□ -0.74
SCN9A-204ENST00000452182 OR2T29Q8NH02 315 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 OR6S1Q8NH40 331 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 SLC7A13Q8TCU3 470 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 TMEM239Q8WW34 195 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 ACOT11Q8WXI4 607 aaPredicted RBP10.41□□□□□ -0.74
SCN9A-204ENST00000452182 MIB2Q96AX9 1013 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 EPYCQ99645 322 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 FUZQ9BT04 418 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 TMEM185BQ9H7F4 350 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 RHCGQ9UBD6 479 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 DNAJB9Q9UBS3 223 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 TRAPPC4Q9Y296 219 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 TESMINQ9Y4I5 508 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 CFAP46Q8IYW2 2715 aa10.41□□□□□ -0.74
SCN9A-204ENST00000452182 A0A0J9YW62 118 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 ZC3H12DA2A288 527 aaKnown RBP10.4□□□□□ -0.74
SCN9A-204ENST00000452182 AHRRA9YTQ3 701 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 DNPH1O43598 174 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 OR2T1O43869 369 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 DEAF1O75398 565 aaPredicted RBP10.4□□□□□ -0.74
SCN9A-204ENST00000452182 MPDZO75970 2070 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 PMS2P2O95744 297 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 CCNA2P20248 432 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 FUT4P22083 530 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 SHC1P29353 583 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 SFTPDP35247 375 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 PTGER4P35408 488 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 RPS3AP61247 264 aaKnown RBP10.4□□□□□ -0.74
SCN9A-204ENST00000452182 SPIBQ01892 262 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 TLE1Q04724 770 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 GTF3C1Q12789 2109 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 MYBPHQ13203 477 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 SF3B4Q15427 424 aaKnown RBP eCLIP10.4□□□□□ -0.74
SCN9A-204ENST00000452182 GXYLT1Q4G148 440 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 PDSS1Q5T2R2 415 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 TMPPEQ6ZT21 453 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 GALNT11Q8NCW6 608 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 OR2V1Q8NHB1 315 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 RNF217Q8TC41 542 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 ZPLD1Q8TCW7 415 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 TMEM255BQ8WV15 326 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 PYDC1Q8WXC3 89 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 SMPDL3BQ92485 455 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 MED12Q93074 2177 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 ARL5BQ96KC2 179 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 OR11A1Q9GZK7 315 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 COQ10BQ9H8M1 238 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 TNFRSF10DQ9UBN6 386 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 LYVE1Q9Y5Y7 322 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 CHD6Q8TD26 2715 aa10.4□□□□□ -0.74
SCN9A-204ENST00000452182 TRAV36DV7A0A075B6V5 113 aa10.4□□□□□ -0.75
SCN9A-204ENST00000452182 A0A087WUU8 490 aa10.4□□□□□ -0.75
SCN9A-204ENST00000452182 H3BNX3 289 aa10.4□□□□□ -0.75
SCN9A-204ENST00000452182 EIF1AYO14602 144 aaKnown RBP10.4□□□□□ -0.75
SCN9A-204ENST00000452182 PRRG2O14669 202 aa10.4□□□□□ -0.75
SCN9A-204ENST00000452182 CLOCKO15516 846 aa10.4□□□□□ -0.75
SCN9A-204ENST00000452182 SLC19A2O60779 497 aa10.4□□□□□ -0.75
SCN9A-204ENST00000452182 WDR1O75083 606 aa10.4□□□□□ -0.75
SCN9A-204ENST00000452182 TIPRLO75663 272 aa10.4□□□□□ -0.75
SCN9A-204ENST00000452182 HOXD4P09016 255 aaPredicted RBP10.4□□□□□ -0.75
SCN9A-204ENST00000452182 TFPIP10646 304 aa10.4□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms