RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 COPS4Q9BT78 406 aa12.77□□□□□ -0.37
GPNMB-203ENST00000409458 IFT27Q9BW83 186 aa12.77□□□□□ -0.37
GPNMB-203ENST00000409458 GPN2Q9H9Y4 310 aaPredicted RBP12.77□□□□□ -0.37
GPNMB-203ENST00000409458 CPNE5Q9HCH3 593 aa12.77□□□□□ -0.37
GPNMB-203ENST00000409458 SDHAF3Q9NRP4 125 aa12.77□□□□□ -0.37
GPNMB-203ENST00000409458 HPF1Q9NWY4 346 aa12.77□□□□□ -0.37
GPNMB-203ENST00000409458 TMED7Q9Y3B3 224 aa12.77□□□□□ -0.37
GPNMB-203ENST00000409458 ZNF337Q9Y3M9 751 aa12.77□□□□□ -0.37
GPNMB-203ENST00000409458 ZC3H12DA2A288 527 aaKnown RBP12.76□□□□□ -0.37
GPNMB-203ENST00000409458 SUSD5O60279 629 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 PPP1R3DO95685 299 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 LIFP15018 202 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 GRK5P34947 590 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 MAP2K4P45985 399 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 DLX5P56178 289 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 MVKQ03426 396 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 LTBQ06643 244 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 FOXF1Q12946 379 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 SNTA1Q13424 505 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 SLC25A30Q5SVS4 291 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 TMEM81Q6P7N7 255 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 PRSS48Q7RTY5 328 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 ADGRG3Q86Y34 549 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 LNX2Q8N448 690 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 WDSUB1Q8N9V3 476 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 OR2M3Q8NG83 312 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 PAQR8Q8TEZ7 354 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 TMEM234Q8WY98 164 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 ST8SIA1Q92185 356 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 PSMF1Q92530 271 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 THOC3Q96J01 351 aaKnown RBP12.76□□□□□ -0.37
GPNMB-203ENST00000409458 Q96MT0 163 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 ZNF582Q96NG8 517 aaPredicted RBP12.76□□□□□ -0.37
GPNMB-203ENST00000409458 SECISBP2Q96T21 854 aaKnown RBP12.76□□□□□ -0.37
GPNMB-203ENST00000409458 TEX12Q9BXU0 123 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 FAM192AQ9GZU8 254 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 MED17Q9NVC6 651 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 FBXL2Q9UKC9 423 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 VDAC3Q9Y277 283 aa12.76□□□□□ -0.37
GPNMB-203ENST00000409458 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 SMIM31A0A1B0GVY4 71 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 HTR3EA5X5Y0 456 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 SLC30A4O14863 429 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 FADS2O95864 444 aaKnown RBP12.75□□□□□ -0.37
GPNMB-203ENST00000409458 CDK1P06493 297 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 ADRA2AP08913 450 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 JUNBP17275 347 aaPredicted RBP12.75□□□□□ -0.37
GPNMB-203ENST00000409458 MSX1P28360 303 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 SLC6A6P31641 620 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 SLC15A1P46059 708 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 RPS5P46782 204 aaKnown RBP12.75□□□□□ -0.37
GPNMB-203ENST00000409458 RPS4XP62701 263 aaKnown RBP12.75□□□□□ -0.37
GPNMB-203ENST00000409458 NHLH1Q02575 133 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 ZNF91Q05481 1191 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 RAB39AQ14964 217 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 ACER2Q5QJU3 275 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 DCAF10Q5QP82 559 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 IGF2-ASQ6U949 168 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 IGFN1Q86VF2 1251 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 CYP4Z2PQ8N1L4 340 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 C10orf53Q8N6V4 93 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 FADS6Q8N9I5 356 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 LIPHQ8WWY8 451 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 TAAR8Q969N4 342 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 DNAJA3Q96EY1 480 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 PLEKHA8Q96JA3 519 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 FRMD6Q96NE9 622 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 PTDSS2Q9BVG9 487 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 RBM38Q9H0Z9 239 aaKnown RBP12.75□□□□□ -0.37
GPNMB-203ENST00000409458 PROK2Q9HC23 129 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 ANKRD10Q9NXR5 420 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 CUL9Q8IWT3 2517 aa12.75□□□□□ -0.37
GPNMB-203ENST00000409458 KDM4EB2RXH2 506 aaPredicted RBP12.74□□□□□ -0.37
GPNMB-203ENST00000409458 SHISA8B8ZZ34 492 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 MCIDASD6RGH6 385 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 ETV2O00321 342 aaPredicted RBP12.74□□□□□ -0.37
GPNMB-203ENST00000409458 MRPS14O60783 128 aaKnown RBP12.74□□□□□ -0.37
GPNMB-203ENST00000409458 NPIPB7O75200 414 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 SLC25A12O75746 678 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 NDUFB2O95178 105 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 BGLAPP02818 100 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 HMGN1P05114 100 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 STSP08842 583 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 DBTP11182 482 aaKnown RBP12.74□□□□□ -0.37
GPNMB-203ENST00000409458 C21orf33P30042 268 aaPredicted RBP12.74□□□□□ -0.37
GPNMB-203ENST00000409458 HTR3AP46098 478 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 ZNF41P51814 821 aaPredicted RBP12.74□□□□□ -0.37
GPNMB-203ENST00000409458 FOXK2Q01167 660 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 EMX1Q04741 257 aaPredicted RBP12.74□□□□□ -0.37
GPNMB-203ENST00000409458 PLPPR5Q32ZL2 321 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 SLC35F1Q5T1Q4 408 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 ATP1A1-AS1Q5TC04 95 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 C1QL3Q5VWW1 255 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 MEDAGQ5VYS4 303 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 RTL4Q6ZR62 310 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 GPR141Q7Z602 305 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 BEST3Q8N1M1 668 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 SLC43A2Q8N370 569 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 MOSPD2Q8NHP6 518 aa12.74□□□□□ -0.37
GPNMB-203ENST00000409458 FAR1Q8WVX9 515 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms