RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 AGAP7PQ5VUJ5 663 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 ACSM5Q6NUN0 579 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 H3F3CQ6NXT2 135 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 SLC27A4Q6P1M0 643 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 CD300LDQ6UXZ3 194 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 LINC00114Q6XXX2 140 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 ZNF620Q6ZNG0 422 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 IGFN1Q86VF2 1251 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 ADGRG3Q86Y34 549 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 PLCZ1Q86YW0 608 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 DEPDC4Q8N2C3 294 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 TCEANCQ8N8B7 351 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 OR52L1Q8NGH7 329 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 OR8D4Q8NGM9 314 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 OR1J4Q8NGS1 313 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 SNRNP27Q8WVK2 155 aaKnown RBP3.37□□□□□ -1.87
RTN4-208ENST00000404909 KCNE4Q8WWG9 221 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 THAP4Q8WY91 577 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 OSTF1Q92882 214 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 FGF11Q92914 225 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 AGAP4Q96P64 663 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 TNFRSF13CQ96RJ3 184 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 PITX2Q99697 317 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 ZNF426Q9BUY5 554 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 IFT27Q9BW83 186 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 ADAM19Q9H013 955 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 ENKD1Q9H0I2 346 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 OR52D1Q9H346 318 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 NANSQ9NR45 359 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 SACM1LQ9NTJ5 587 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 GPR52Q9Y2T5 361 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 TMED7Q9Y3B3 224 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 CDH10Q9Y6N8 788 aa3.37□□□□□ -1.87
RTN4-208ENST00000404909 DSPP15924 2871 aaKnown RBP3.37□□□□□ -1.87
RTN4-208ENST00000404909 PTPRQQ9UMZ3 2332 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 DNAJC13O75165 2243 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 TMEM72A0PK05 275 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 KLF4O43474 513 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 IL11P20809 199 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 DPP4P27487 766 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 MSX1P28360 303 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 NOS3P29474 1203 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 RPL4P36578 427 aaKnown RBP3.36□□□□□ -1.87
RTN4-208ENST00000404909 SMSP52788 366 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 CTBP2P56545 445 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 EGR4Q05215 589 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 PIGFQ07326 219 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 TUBA3CQ13748 450 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 MAD2L1BPQ15013 274 aaPredicted RBP3.36□□□□□ -1.87
RTN4-208ENST00000404909 OR1C1Q15619 314 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 RAET1LQ5VY80 246 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 TUBA3EQ6PEY2 450 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 THSD4Q6ZMP0 1018 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 TMPRSS11FQ6ZWK6 438 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 BCDIN3DQ7Z5W3 292 aaKnown RBP3.36□□□□□ -1.87
RTN4-208ENST00000404909 CCDC103Q8IW40 242 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 DND1Q8IYX4 353 aaKnown RBP3.36□□□□□ -1.87
RTN4-208ENST00000404909 ARMC10Q8N2F6 343 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 TSPAN14Q8NG11 270 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 OR2T33Q8NG76 320 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 SGCDQ92629 289 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 TAAR8Q969N4 342 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 PLEKHA8Q96JA3 519 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 MOGAT1Q96PD6 335 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 SIGLEC12Q96PQ1 595 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 SECISBP2Q96T21 854 aaKnown RBP3.36□□□□□ -1.87
RTN4-208ENST00000404909 SLX1AQ9BQ83 275 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 TEX12Q9BXU0 123 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 ANGPTL4Q9BY76 406 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 HES7Q9BYE0 225 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 CCDC90BQ9GZT6 254 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP3.36□□□□□ -1.875e-12■■□□□ 11.4
RTN4-208ENST00000404909 PROK2Q9HC23 129 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 CHRNA9Q9UGM1 479 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 DKKL1Q9UK85 242 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 POLHQ9Y253 713 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 FREM3P0C091 2139 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 ZNF407Q9C0G0 2248 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 ZNF891A8MT65 544 aaPredicted RBP3.36□□□□□ -1.87
RTN4-208ENST00000404909 PRKYO43930 277 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 HCN1O60741 890 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 FAM20BO75063 409 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 TRAPPC6AO75865 159 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 RCBTB2O95199 551 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 SNX4O95219 450 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 HIST1H2ABP04908 130 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 AHCYP23526 432 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 SFTPDP35247 375 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 HTR3AP46098 478 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 RPS6KA3P51812 740 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 SUMO3P55854 103 aaPredicted RBP3.36□□□□□ -1.87
RTN4-208ENST00000404909 NUP107P57740 925 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 FXYD6P3P58550 94 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 ARG2P78540 354 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 DBPQ10586 325 aaPredicted RBP3.36□□□□□ -1.87
RTN4-208ENST00000404909 ZBED5Q49AG3 693 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 BROXQ5VW32 411 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 SLX4IPQ5VYV7 408 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 SLC6A19Q695T7 634 aa3.36□□□□□ -1.87
RTN4-208ENST00000404909 TIGD3Q6B0B8 471 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms