RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 HS3ST1O14792 307 aa19.19■□□□□ 0.66
CCDC28B-201ENST00000373602 POLR3GO15318 223 aaPredicted RBP19.19■□□□□ 0.66
CCDC28B-201ENST00000373602 LYZL6O75951 148 aa19.19■□□□□ 0.66
CCDC28B-201ENST00000373602 IGHV1-2P23083 117 aa19.19■□□□□ 0.66
CCDC28B-201ENST00000373602 STX1BP61266 288 aa19.19■□□□□ 0.66
CCDC28B-201ENST00000373602 SLC35A1P78382 337 aa19.19■□□□□ 0.66
CCDC28B-201ENST00000373602 TTMPQ5BVD1 217 aa19.19■□□□□ 0.66
CCDC28B-201ENST00000373602 ADAM5Q6NVV9 412 aa19.19■□□□□ 0.66
CCDC28B-201ENST00000373602 SLC2A7Q6PXP3 512 aa19.19■□□□□ 0.66
CCDC28B-201ENST00000373602 CCDC103Q8IW40 242 aa19.19■□□□□ 0.66
CCDC28B-201ENST00000373602 ZNF611Q8N823 705 aa19.19■□□□□ 0.66
CCDC28B-201ENST00000373602 TMEM19Q96HH6 336 aa19.19■□□□□ 0.66
CCDC28B-201ENST00000373602 C18orf12Q96KH6 178 aa19.19■□□□□ 0.66
CCDC28B-201ENST00000373602 ZNF443Q9Y2A4 671 aaPredicted RBP19.19■□□□□ 0.66
CCDC28B-201ENST00000373602 NOSIPQ9Y314 301 aaKnown RBP19.19■□□□□ 0.66
CCDC28B-201ENST00000373602 MAP1AP78559 2803 aaPredicted RBP19.19■□□□□ 0.66
CCDC28B-201ENST00000373602 FLNAP21333 2647 aaKnown RBP19.19■□□□□ 0.66
CCDC28B-201ENST00000373602 A0A0G2JPF8 293 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 HNRNPCL2B2RXH8 293 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 HNRNPCL3B7ZW38 293 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 EIF1BO60739 113 aaKnown RBP19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 HNRNPCL1O60812 293 aaKnown RBP19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 RAMP1O60894 148 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 THBS1P07996 1170 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 GKN3PP0CG01 181 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 HNRNPCL4P0DMR1 293 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 IMPDH2P12268 514 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 HOXB9P17482 250 aaPredicted RBP19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 NTF4P34130 210 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 ACAA2P42765 397 aaKnown RBP19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 IDH3AP50213 366 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 CAPRIN1Q14444 709 aaKnown RBP19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 RGNQ15493 299 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 ZSWIM7Q19AV6 140 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 RPS26P11Q5JNZ5 115 aaPredicted RBP19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 RNF220Q5VTB9 566 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 FBXW9Q5XUX1 488 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 LSRQ86X29 649 aaPredicted RBP19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 AKAP1Q92667 903 aaKnown RBP eCLIP19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 PERPQ96FX8 193 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 EBF4Q9BQW3 602 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 CCDC28BQ9BUN5 200 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 GSX2Q9BZM3 304 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 RAD21L1Q9H4I0 556 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 ESRP2Q9H6T0 727 aaKnown RBP19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 RNF115Q9Y4L5 304 aa19.18■□□□□ 0.66
CCDC28B-201ENST00000373602 A0A096LPI6 279 aa19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 ZC3H12DA2A288 527 aaKnown RBP19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 TMEM247A6NEH6 219 aa19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 CLIC1O00299 241 aa19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 TMCC2O75069 709 aa19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 PGM3O95394 542 aa19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 CD3EP07766 207 aa19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 BMP2P12643 396 aa19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 PAX1P15863 534 aa19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 FADDQ13158 208 aa19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 LARS2Q15031 903 aaKnown RBP19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 BLOC1S3Q6QNY0 202 aa19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 BIVMQ86UB2 503 aa19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 FUNDC1Q8IVP5 155 aa19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 CLIP4Q8N3C7 705 aa19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 ZNF433Q8N7K0 673 aaPredicted RBP19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 LILRB1Q8NHL6 650 aaPredicted RBP19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 TMEM171Q8WVE6 324 aa19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 APH1AQ96BI3 265 aa19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 NAA11Q9BSU3 229 aaPredicted RBP19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 BCL2L10Q9HD36 194 aa19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 CHST2Q9Y4C5 530 aa19.17■□□□□ 0.66
CCDC28B-201ENST00000373602 NUDT7P0C024 238 aa19.16■□□□□ 0.66
CCDC28B-201ENST00000373602 GGT1P19440 569 aa19.16■□□□□ 0.66
CCDC28B-201ENST00000373602 PTH2RP49190 550 aa19.16■□□□□ 0.66
CCDC28B-201ENST00000373602 STK11Q15831 433 aa19.16■□□□□ 0.66
CCDC28B-201ENST00000373602 TIMM23BQ5SRD1 257 aa19.16■□□□□ 0.66
CCDC28B-201ENST00000373602 PRAMEF8Q5VWM4 474 aa19.16■□□□□ 0.66
CCDC28B-201ENST00000373602 PRAMEF7Q5VXH5 474 aa19.16■□□□□ 0.66
CCDC28B-201ENST00000373602 WBP2NLQ6ICG8 309 aa19.16■□□□□ 0.66
CCDC28B-201ENST00000373602 SSX8Q7RTT4 187 aa19.16■□□□□ 0.66
CCDC28B-201ENST00000373602 YTHDF3Q7Z739 585 aaKnown RBP19.16■□□□□ 0.66
CCDC28B-201ENST00000373602 ATG4DQ86TL0 474 aaPredicted RBP19.16■□□□□ 0.66
CCDC28B-201ENST00000373602 P2RY8Q86VZ1 359 aa19.16■□□□□ 0.66
CCDC28B-201ENST00000373602 SPATA9Q9BWV2 254 aa19.16■□□□□ 0.66
CCDC28B-201ENST00000373602 A4GALTQ9NPC4 353 aa19.16■□□□□ 0.66
CCDC28B-201ENST00000373602 ZNF232Q9UNY5 417 aa19.16■□□□□ 0.66
CCDC28B-201ENST00000373602 IFT52Q9Y366 437 aa19.16■□□□□ 0.66
CCDC28B-201ENST00000373602 ZFHX3Q15911 3703 aa19.15■□□□□ 0.66
CCDC28B-201ENST00000373602 DPRXA6NFQ7 191 aa19.15■□□□□ 0.66
CCDC28B-201ENST00000373602 CLOCKO15516 846 aa19.15■□□□□ 0.66
CCDC28B-201ENST00000373602 MRPL33O75394 65 aaKnown RBP19.15■□□□□ 0.66
CCDC28B-201ENST00000373602 IGHV3-9P01782 118 aa19.15■□□□□ 0.66
CCDC28B-201ENST00000373602 INHBBP09529 407 aa19.15■□□□□ 0.66
CCDC28B-201ENST00000373602 CXCR1P25024 350 aa19.15■□□□□ 0.66
CCDC28B-201ENST00000373602 AQP5P55064 265 aa19.15■□□□□ 0.66
CCDC28B-201ENST00000373602 COPZ1P61923 177 aa19.15■□□□□ 0.66
CCDC28B-201ENST00000373602 BSPH1Q075Z2 132 aa19.15■□□□□ 0.66
CCDC28B-201ENST00000373602 PPA1Q15181 289 aa19.15■□□□□ 0.66
CCDC28B-201ENST00000373602 LRIF1Q5T3J3 769 aa19.15■□□□□ 0.66
CCDC28B-201ENST00000373602 PAQR6Q6TCH4 344 aa19.15■□□□□ 0.66
CCDC28B-201ENST00000373602 MSRB3Q8IXL7 192 aa19.15■□□□□ 0.66
CCDC28B-201ENST00000373602 UBE2J2Q8N2K1 259 aa19.15■□□□□ 0.66
CCDC28B-201ENST00000373602 GOLGA6L1Q8N7Z2 621 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms