RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 ZNF578Q96N58 590 aaPredicted RBP3.25□□□□□ -1.89
MCF2-202ENST00000370573 WDFY2Q96P53 400 aa3.25□□□□□ -1.89
MCF2-202ENST00000370573 TRNT1Q96Q11 434 aaKnown RBP3.25□□□□□ -1.89
MCF2-202ENST00000370573 STACQ99469 402 aa3.25□□□□□ -1.89
MCF2-202ENST00000370573 SDF2Q99470 211 aa3.25□□□□□ -1.89
MCF2-202ENST00000370573 SEPHS2Q99611 448 aa3.25□□□□□ -1.89
MCF2-202ENST00000370573 WFDC6Q9BQY6 131 aa3.25□□□□□ -1.89
MCF2-202ENST00000370573 SEMA4CQ9C0C4 833 aa3.25□□□□□ -1.89
MCF2-202ENST00000370573 NXF5Q9H1B4 397 aaKnown RBP3.25□□□□□ -1.89
MCF2-202ENST00000370573 SLC38A1Q9H2H9 487 aa3.25□□□□□ -1.89
MCF2-202ENST00000370573 LIN28AQ9H9Z2 209 aaKnown RBP3.25□□□□□ -1.89
MCF2-202ENST00000370573 BCL2L10Q9HD36 194 aa3.25□□□□□ -1.89
MCF2-202ENST00000370573 DUSP22Q9NRW4 184 aa3.25□□□□□ -1.89
MCF2-202ENST00000370573 THUMPD1Q9NXG2 353 aaKnown RBP3.25□□□□□ -1.89
MCF2-202ENST00000370573 IL17BQ9UHF5 180 aa3.25□□□□□ -1.89
MCF2-202ENST00000370573 KCNE5Q9UJ90 142 aa3.25□□□□□ -1.89
MCF2-202ENST00000370573 NXT1Q9UKK6 140 aaKnown RBP3.25□□□□□ -1.89
MCF2-202ENST00000370573 LYVE1Q9Y5Y7 322 aa3.25□□□□□ -1.89
MCF2-202ENST00000370573 MRPS18BQ9Y676 258 aaKnown RBP3.25□□□□□ -1.89
MCF2-202ENST00000370573 DCHS1Q96JQ0 3298 aa3.25□□□□□ -1.89
MCF2-202ENST00000370573 CEP295Q9C0D2 2601 aa3.25□□□□□ -1.89
MCF2-202ENST00000370573 FREM2Q5SZK8 3169 aa3.25□□□□□ -1.89
MCF2-202ENST00000370573 IGHV1-45A0A0A0MS14 117 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 NPIPA5A0A0B4J1W7 369 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 A0A0G2JPF8 293 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 TRABD2BA6NFA1 517 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 SH2D7A6NKC9 451 aaPredicted RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 DUXAA6NLW8 204 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 HNRNPCL2B2RXH8 293 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 HNRNPCL3B7ZW38 293 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 C5orf58C9J3I9 102 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 NPIPA7E9PJI5 369 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 ZNF354AO60765 605 aaPredicted RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 FKBP6O75344 327 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 GMNNO75496 209 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 KCNK2O95069 426 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 MFN2O95140 757 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 OR2C1O95371 312 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 EPPINO95925 133 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 MT-ND1P03886 318 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 SEMG1P04279 462 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 NPIPA8P0DM63 369 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 HNRNPCL4P0DMR1 293 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 UMPSP11172 480 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 COX6A1P12074 109 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 ANPEPP15144 967 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 TNFRSF1BP20333 461 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 DRD5P21918 477 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 MMP11P24347 488 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 PSMA4P25789 261 aaKnown RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 RBMS1P29558 406 aaKnown RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 DLSTP36957 453 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 FOLR3P41439 243 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 PPICP45877 212 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 ANXA11P50995 505 aaKnown RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 SELENOWP63302 87 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 TXNL4AP83876 142 aaKnown RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 C17orf67Q0P5P2 114 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 SRSF6Q13247 344 aaKnown RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 EBPQ15125 230 aaKnown RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 RCN1Q15293 331 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 MAPK14Q16539 360 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 DUSP7Q16829 419 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 GPAT3Q53EU6 434 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 MTX3Q5HYI7 312 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 DCST2Q5T1A1 773 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 TYW3Q6IPR3 259 aaKnown RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 HMBOX1Q6NT76 420 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 CLEC9AQ6UXN8 241 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 FRRS1Q6ZNA5 592 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 LRRC74BQ6ZQY2 392 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 C16orf62Q7Z3J2 963 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 EID3Q8N140 333 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 BCORP1Q8N888 145 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 COX18Q8N8Q8 333 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 SMYD1Q8NB12 490 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 C7orf57Q8NEG2 295 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 B3GNT7Q8NFL0 401 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 TOR1AIP2Q8NFQ8 470 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 OR11G2Q8NGC1 345 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 MBD3L2Q8NHZ7 208 aaPredicted RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 APOBEC4Q8WW27 367 aaKnown RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 EXTL1Q92935 676 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 RNFT2Q96EX2 444 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 RMND5BQ96G75 393 aaPredicted RBP3.24□□□□□ -1.89
MCF2-202ENST00000370573 PYURFQ96I23 114 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 C7orf34Q96L11 122 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 BTBD9Q96Q07 612 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 HIST1H2AAQ96QV6 131 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 PKP2Q99959 881 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 TRIM15Q9C019 465 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 WWTR1Q9GZV5 400 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 DCLRE1BQ9H816 532 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 RNPEPL1Q9HAU8 725 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 ARMC1Q9NVT9 282 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 FAM30AQ9NZY2 134 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 P2RX2Q9UBL9 471 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 PRODH2Q9UF12 536 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 ANAPC2Q9UJX6 822 aa3.24□□□□□ -1.89
MCF2-202ENST00000370573 KLK13Q9UKR3 277 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms