RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ZFPM2Q8WW38 1151 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 DDOQ99489 341 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 SIRT7Q9NRC8 400 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 B4DXG7 233 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 HOXD11P31277 338 aaPredicted RBP11.83□□□□□ -0.52
COL6A3-203ENST00000353578 RBP2P50120 134 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 CST9LP1Q5W188 147 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 ETFRF1Q6IPR1 90 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.83□□□□□ -0.52
COL6A3-203ENST00000353578 DOK1Q99704 481 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 RALYQ9UKM9 306 aaKnown RBP11.83□□□□□ -0.52
COL6A3-203ENST00000353578 LOC100289279A0A1B0GTE1 492 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 SERPINA5P05154 406 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 C21orf33P30042 268 aaPredicted RBP11.83□□□□□ -0.52
COL6A3-203ENST00000353578 HMGCLP35914 325 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 FAM74A1Q5RGS3 127 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 OR51F2Q8NH61 342 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 C1orf198Q9H425 327 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 BRWD1Q9NSI6 2320 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 GPX3P22352 226 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 GCSHP23434 173 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 ZNF92Q03936 586 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 RGNQ15493 299 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 LTB4RQ15722 352 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 ARSGQ96EG1 525 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 GJD2Q9UKL4 321 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 ZNF337Q9Y3M9 751 aa11.83□□□□□ -0.52
COL6A3-203ENST00000353578 COL5A1-AS1Q5SY13 56 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 KCTD11Q693B1 232 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 PSMB6P28072 239 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 TNFSF9P41273 254 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 FFAR4Q5NUL3 377 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 OR2D3Q8NGH3 330 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 INPP5KQ9BT40 448 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 SLC35D1Q9NTN3 355 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 NSG2Q9Y328 171 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 NAA10P41227 235 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-203ENST00000353578 FAM217AQ8IXS0 508 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 PPP1R35Q8TAP8 253 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 RAB24Q969Q5 203 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 SLCO1B1Q9Y6L6 691 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 AKAP11Q9UKA4 1901 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 A0A0U1RQK1 487 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 DVL1P1P54792 670 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-203ENST00000353578 RCBTB1Q8NDN9 531 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 TFAP2BQ92481 460 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 KCNA7Q96RP8 456 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 PEBP4Q96S96 227 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 LMF2Q9BU23 707 aaKnown RBP11.82□□□□□ -0.52
COL6A3-203ENST00000353578 SIDT1Q9NXL6 827 aaKnown RBP11.82□□□□□ -0.52
COL6A3-203ENST00000353578 IL5P05113 134 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 SLC14A1Q13336 389 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 MS4A13Q5J8X5 152 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 ZNF322Q6U7Q0 402 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-203ENST00000353578 CPOQ8IVL8 374 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 NAA11Q9BSU3 229 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-203ENST00000353578 SRRQ9GZT4 340 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 ADARB1P78563 741 aaKnown RBP11.82□□□□□ -0.52
COL6A3-203ENST00000353578 SPRED3Q2MJR0 410 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 OVCH1Q7RTY7 1134 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 TFGQ92734 400 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-203ENST00000353578 GPR45Q9Y5Y3 372 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 DDX60Q8IY21 1712 aaKnown RBP11.82□□□□□ -0.52
COL6A3-203ENST00000353578 NXNL2Q5VZ03 156 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 SLC24A4Q8NFF2 622 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 TSTD1Q8NFU3 115 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 OR4K15Q8NH41 348 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 PTDSS2Q9BVG9 487 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 SYNPO2LQ9H987 977 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 KIAA1217Q5T5P2 1943 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 AGXTP21549 392 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 ACTR1AP61163 376 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 ZNF91Q05481 1191 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 PPP1R8Q12972 351 aaKnown RBP11.82□□□□□ -0.52
COL6A3-203ENST00000353578 ZNF648Q5T619 568 aaPredicted RBP11.82□□□□□ -0.52
COL6A3-203ENST00000353578 GDPD4Q6W3E5 623 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 OR8J2Q8NGG1 315 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 POMT2Q9UKY4 750 aa11.82□□□□□ -0.52
COL6A3-203ENST00000353578 A8MU76 341 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 ITGB2P05107 769 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 PGCP20142 388 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 PIM3Q86V86 326 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 BAP18Q8IXM2 172 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 SLC39A11Q8N1S5 342 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 CPA6Q8N4T0 437 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 NAXEQ8NCW5 288 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 OR10G6Q8NH81 332 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 FBXO27Q8NI29 283 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 ATG101Q9BSB4 218 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 TEX101Q9BY14 249 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 SLC35A3Q9Y2D2 325 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 A0A1B0GV50 99 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 C2orf72A6NCS6 295 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 CT45A8P0DMV1 189 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 CT45A9P0DMV2 189 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 HTR1FP30939 366 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 CT45A2Q5DJT8 189 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 RALGAPA1Q6GYQ0 2036 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 C5P01031 1676 aa11.81□□□□□ -0.52
COL6A3-203ENST00000353578 TEX50A0A1B0GTY4 177 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms