RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 CCR6P51684 374 aa16.2■□□□□ 0.18
SYNPO-201ENST00000307662 EMP2P54851 167 aa16.2■□□□□ 0.18
SYNPO-201ENST00000307662 DUSP6Q16828 381 aa16.2■□□□□ 0.18
SYNPO-201ENST00000307662 UBTD2Q8WUN7 234 aa16.2■□□□□ 0.18
SYNPO-201ENST00000307662 NIPSNAP1Q9BPW8 284 aa16.2■□□□□ 0.18
SYNPO-201ENST00000307662 GPR34Q9UPC5 381 aa16.2■□□□□ 0.18
SYNPO-201ENST00000307662 PUS1Q9Y606 427 aaKnown RBP eCLIP16.2■□□□□ 0.18
SYNPO-201ENST00000307662 FOXE1O00358 373 aaPredicted RBP16.19■□□□□ 0.18
SYNPO-201ENST00000307662 STK17BO94768 372 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 SLC10A3P09131 477 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 C5AR1P21730 350 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 RPS19P39019 145 aaKnown RBP16.19■□□□□ 0.18
SYNPO-201ENST00000307662 TAS2R46P59540 309 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 ISL1P61371 349 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 RACK1P63244 317 aaKnown RBP16.19■□□□□ 0.18
SYNPO-201ENST00000307662 SIRPAP78324 504 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 DEFB119Q8N690 84 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 ELOVL3Q9HB03 270 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 GPR137BO60478 399 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 LCATP04180 440 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 DPPA4Q7L190 304 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 NLRP8Q86W28 1048 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 SLC38A5Q8WUX1 472 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 SEC22AQ96IW7 307 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 CTRCQ99895 268 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 GOLGA4Q13439 2230 aaKnown RBP16.19■□□□□ 0.18
SYNPO-201ENST00000307662 C17orf113A0A1B0GUU1 675 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 KCNK2O95069 426 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 CLDN12P56749 244 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 ASAH1Q13510 395 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 SLC22A6Q4U2R8 563 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 TMEM200AQ86VY9 491 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 HHIPL1Q96JK4 782 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 MED20Q9H944 212 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 OTOL1A6NHN0 477 aaPredicted RBP16.19■□□□□ 0.18
SYNPO-201ENST00000307662 C1orf105O95561 183 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 OR13C2Q8NGS9 318 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 LRRC46Q96FV0 321 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 CLDND1Q9NY35 253 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 FBXO7Q9Y3I1 522 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 SLC22A7Q9Y694 548 aa16.19■□□□□ 0.18
SYNPO-201ENST00000307662 F5H5K5 113 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 HNRNPA1P09651 372 aaKnown RBP eCLIP16.18■□□□□ 0.18
SYNPO-201ENST00000307662 SSTP61278 116 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 PKDCCQ504Y2 493 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 UNQ6126/PRO20091Q6UXV3 157 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 DIO2Q92813 273 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 CRYBG1Q9Y4K1 1723 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.18■□□□□ 0.18
SYNPO-201ENST00000307662 DUX1O43812 170 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 SLC16A7O60669 478 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 OR2T7P0C7T2 308 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 GP2P55259 537 aaKnown RBP16.18■□□□□ 0.18
SYNPO-201ENST00000307662 KIAA1024LP59773 190 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 ACY1Q03154 408 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 ABHD12BQ7Z5M8 362 aaPredicted RBP16.18■□□□□ 0.18
SYNPO-201ENST00000307662 ZNF100Q8IYN0 542 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 NLGN4XQ8N0W4 816 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 OR2T27Q8NH04 317 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 RBM24Q9BX46 236 aaKnown RBP16.18■□□□□ 0.18
SYNPO-201ENST00000307662 SLC17A9Q9BYT1 436 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 ELAVL4P26378 380 aaKnown RBP16.18■□□□□ 0.18
SYNPO-201ENST00000307662 COL9A2Q14055 689 aaPredicted RBP16.18■□□□□ 0.18
SYNPO-201ENST00000307662 CCNJQ5T5M9 372 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 TMEM151BQ8IW70 566 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 OR4K15Q8NH41 348 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 MARC2Q969Z3 335 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 FYTTD1Q96QD9 318 aaKnown RBP16.18■□□□□ 0.18
SYNPO-201ENST00000307662 CPEB1Q9BZB8 566 aaKnown RBP16.18■□□□□ 0.18
SYNPO-201ENST00000307662 SMCO4Q9NRQ5 59 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 TMEM269A0A1B0GVZ9 245 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 H0YIV9 168 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 SULT1C4O75897 302 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 SCGB1D1O95968 90 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 HIST1H1TP22492 207 aaPredicted RBP16.18■□□□□ 0.18
SYNPO-201ENST00000307662 HTR1FP30939 366 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 ETV5P41161 510 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 RPP30P78346 268 aaKnown RBP16.18■□□□□ 0.18
SYNPO-201ENST00000307662 PXDC1Q5TGL8 231 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 OR52R1Q8NGF1 315 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 B4GALT7Q9UBV7 327 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 TCRBV21S2A2A0A5A6 115 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 TRABD2BA6NFA1 517 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 EFCAB7A8K855 629 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 ADAM23O75077 832 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 CTSCP53634 463 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 SLX4IPQ5VYV7 408 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 COX15Q7KZN9 410 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 OR51D1Q8NGF3 324 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 SLC25A46Q96AG3 418 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 ISG20Q96AZ6 181 aaKnown RBP16.18■□□□□ 0.18
SYNPO-201ENST00000307662 GSX2Q9BZM3 304 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 MCOLN1Q9GZU1 580 aa16.18■□□□□ 0.18
SYNPO-201ENST00000307662 TMEM212A6NML5 194 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 HIDE1A8MVS5 230 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 ITGB2P05107 769 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 MMP2P08253 660 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 CSNK1DP48730 415 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 PER3P56645 1201 aa16.17■□□□□ 0.18
SYNPO-201ENST00000307662 YIF1BQ5BJH7 314 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms