RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 IMPDH2P12268 514 aa12.79□□□□□ -0.36
HMGN3-201ENST00000275036 NTF4P34130 210 aa12.79□□□□□ -0.36
HMGN3-201ENST00000275036 HTR3AP46098 478 aa12.79□□□□□ -0.36
HMGN3-201ENST00000275036 POLR2HP52434 150 aaKnown RBP12.79□□□□□ -0.36
HMGN3-201ENST00000275036 MTDHQ86UE4 582 aaKnown RBP12.79□□□□□ -0.36
HMGN3-201ENST00000275036 RAD21L1Q9H4I0 556 aa12.79□□□□□ -0.36
HMGN3-201ENST00000275036 GSX1Q9H4S2 264 aaPredicted RBP12.79□□□□□ -0.36
HMGN3-201ENST00000275036 BCL2L10Q9HD36 194 aa12.79□□□□□ -0.36
HMGN3-201ENST00000275036 TMEM45AQ9NWC5 275 aa12.79□□□□□ -0.36
HMGN3-201ENST00000275036 THUMPD1Q9NXG2 353 aaKnown RBP12.79□□□□□ -0.36
HMGN3-201ENST00000275036 GPR52Q9Y2T5 361 aa12.79□□□□□ -0.36
HMGN3-201ENST00000275036 GMEB1Q9Y692 573 aa12.79□□□□□ -0.36
HMGN3-201ENST00000275036 USF3Q68DE3 2245 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 PLCE1Q9P212 2302 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 IGKV3D-15A0A087WSY6 115 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.78□□□□□ -0.36
HMGN3-201ENST00000275036 A0A1W2PP18 115 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 ZNF208O43345 1280 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 FRS3O43559 492 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 PGM3O95394 542 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 PLAUP00749 431 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 ADAP00813 363 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 ARAFP10398 606 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 PPP3CBP16298 524 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 NCF2P19878 526 aaPredicted RBP12.78□□□□□ -0.36
HMGN3-201ENST00000275036 OR3A2P47893 321 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 CLK1P49759 484 aaKnown RBP12.78□□□□□ -0.36
HMGN3-201ENST00000275036 H3F3AP84243 136 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 LARS2Q15031 903 aaKnown RBP12.78□□□□□ -0.36
HMGN3-201ENST00000275036 SFRP5Q5T4F7 317 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 DLEU7Q6UYE1 221 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 SERPINA11Q86U17 422 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 COMTD1Q86VU5 262 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 CCDC103Q8IW40 242 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 ZNF440Q8IYI8 595 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 NFKBIDQ8NI38 313 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 S100PBPQ96BU1 408 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 TACO1Q9BSH4 297 aaKnown RBP12.78□□□□□ -0.36
HMGN3-201ENST00000275036 SPATA9Q9BWV2 254 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 UBTD1Q9HAC8 227 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 BEX4Q9NWD9 120 aaPredicted RBP12.78□□□□□ -0.36
HMGN3-201ENST00000275036 TMEM181Q9P2C4 612 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 EDARQ9UNE0 448 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 ALPK2Q86TB3 2170 aa12.78□□□□□ -0.36
HMGN3-201ENST00000275036 HEATR1Q9H583 2144 aaKnown RBP12.77□□□□□ -0.36
HMGN3-201ENST00000275036 TMEM247A6NEH6 219 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 FKBP2P26885 142 aaKnown RBP12.77□□□□□ -0.37
HMGN3-201ENST00000275036 OR2B6P58173 313 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 IRX1P78414 480 aaPredicted RBP12.77□□□□□ -0.37
HMGN3-201ENST00000275036 HOXC5Q00444 222 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 BNIP2Q12982 314 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 PDK3Q15120 406 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 ZNF311Q5JNZ3 666 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 GCNT6Q5T4J0 391 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 PRAMEF8Q5VWM4 474 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 PRAMEF7Q5VXH5 474 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 SEZ6L2Q6UXD5 910 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 Q6ZT83 130 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 GALNT5Q7Z7M9 940 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 ATG4DQ86TL0 474 aaPredicted RBP12.77□□□□□ -0.37
HMGN3-201ENST00000275036 RETREG3Q86VR2 466 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 WFDC8Q8IUA0 241 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 CADM2Q8N3J6 435 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 BBS10Q8TAM1 723 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 IGFBPL1Q8WX77 278 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 DDIT4LQ96D03 193 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 OR10A4Q9H209 315 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 FANCFQ9NPI8 374 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 ZNF232Q9UNY5 417 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 TRAPPC4Q9Y296 219 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 IFT52Q9Y366 437 aa12.77□□□□□ -0.37
HMGN3-201ENST00000275036 A0A0G2JND7 137 aa12.76□□□□□ -0.37
HMGN3-201ENST00000275036 DNPH1O43598 174 aa12.76□□□□□ -0.37
HMGN3-201ENST00000275036 UQCRBP14927 111 aa12.76□□□□□ -0.37
HMGN3-201ENST00000275036 GPX2P18283 190 aa12.76□□□□□ -0.37
HMGN3-201ENST00000275036 FPR1P21462 350 aa12.76□□□□□ -0.37
HMGN3-201ENST00000275036 SLC16A1P53985 500 aa12.76□□□□□ -0.37
HMGN3-201ENST00000275036 ITGADQ13349 1161 aa12.76□□□□□ -0.37
HMGN3-201ENST00000275036 SELPLGQ14242 412 aa12.76□□□□□ -0.37
HMGN3-201ENST00000275036 TAB1Q15750 504 aa12.76□□□□□ -0.37
HMGN3-201ENST00000275036 ADRM1Q16186 407 aa12.76□□□□□ -0.37
HMGN3-201ENST00000275036 ACKR1Q16570 336 aa12.76□□□□□ -0.37
HMGN3-201ENST00000275036 RUNDC3AQ59EK9 446 aa12.76□□□□□ -0.37
HMGN3-201ENST00000275036 BEX5Q5H9J7 111 aa12.76□□□□□ -0.37
HMGN3-201ENST00000275036 WBP2NLQ6ICG8 309 aa12.76□□□□□ -0.37
HMGN3-201ENST00000275036 STEAP2Q8NFT2 490 aa12.76□□□□□ -0.37
HMGN3-201ENST00000275036 C3orf49Q96BT1 292 aa12.76□□□□□ -0.37
HMGN3-201ENST00000275036 ZHX1-C8orf76Q96EF9 292 aa12.76□□□□□ -0.37
HMGN3-201ENST00000275036 SMR3AQ99954 134 aa12.76□□□□□ -0.37
HMGN3-201ENST00000275036 CPPED1Q9BRF8 314 aaPredicted RBP12.76□□□□□ -0.37
HMGN3-201ENST00000275036 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.76□□□□□ -0.37
HMGN3-201ENST00000275036 TMEM229AB2RXF0 380 aa12.75□□□□□ -0.37
HMGN3-201ENST00000275036 C5orf58C9J3I9 102 aa12.75□□□□□ -0.37
HMGN3-201ENST00000275036 TPST1O60507 370 aa12.75□□□□□ -0.37
HMGN3-201ENST00000275036 LYZL6O75951 148 aa12.75□□□□□ -0.37
HMGN3-201ENST00000275036 IGHV3-9P01782 118 aa12.75□□□□□ -0.37
HMGN3-201ENST00000275036 ETS2P15036 469 aa12.75□□□□□ -0.37
HMGN3-201ENST00000275036 IGHV1-2P23083 117 aa12.75□□□□□ -0.37
HMGN3-201ENST00000275036 PPIBP23284 216 aaKnown RBP12.75□□□□□ -0.37
HMGN3-201ENST00000275036 IL32P24001 234 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms