RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 ST8SIA2Q92186 375 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 CNOT9Q92600 299 aaKnown RBP9.28□□□□□ -0.92
LIG3-201ENST00000262327 MSANTD3Q96H12 275 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 DERL3Q96Q80 235 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 OR14A2Q96R54 314 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.28□□□□□ -0.92
LIG3-201ENST00000262327 RSPH9Q9H1X1 276 aaPredicted RBP9.28□□□□□ -0.92
LIG3-201ENST00000262327 GHITMQ9H3K2 345 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 ADGRL4Q9HBW9 690 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 MED17Q9NVC6 651 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 EVA1BQ9NVM1 165 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 ZNF346Q9UL40 294 aaKnown RBP9.28□□□□□ -0.92
LIG3-201ENST00000262327 ING4Q9UNL4 249 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 STON1Q9Y6Q2 735 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 FAM86C2PA6NEL3 165 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 C2CD4DB7Z1M9 353 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 SOX1O00570 391 aaPredicted RBP9.27□□□□□ -0.93
LIG3-201ENST00000262327 SSNA1O43805 119 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 PEX14O75381 377 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 RAB3BP20337 219 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 NPR2P20594 1047 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 NDUFS1P28331 727 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 ZNF81P51508 661 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 DCST2Q5T1A1 773 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 HES5Q5TA89 166 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 BICRALQ6AI39 1079 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 ZNF433Q8N7K0 673 aaPredicted RBP9.27□□□□□ -0.93
LIG3-201ENST00000262327 MFSD9Q8NBP5 474 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 OR52E2Q8NGJ4 325 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 OR4C6Q8NH72 309 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 ZNF671Q8TAW3 534 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 ZNRF4Q8WWF5 429 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 YIPF5Q969M3 257 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 RELTQ969Z4 430 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 MOAP1Q96BY2 351 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 DNAJA3Q96EY1 480 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 PGLYRP3Q96LB9 341 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 DPAGT1Q9H3H5 408 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 ZNF223Q9UK11 482 aaPredicted RBP9.27□□□□□ -0.93
LIG3-201ENST00000262327 TBC1D3DA0A087WVF3 549 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 TBC1D3IA0A087WXS9 549 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 TBC1D3EA0A087X179 549 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 TBC1D3KA0A087X1G2 549 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 TBC1D3FA6NER0 549 aaPredicted RBP9.27□□□□□ -0.93
LIG3-201ENST00000262327 POM121BA6NF01 834 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 OR2W5A6NFC9 320 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 DUXAA6NLW8 204 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 C4orf47A7E2U8 309 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 TBC1D3LB9A6J9 549 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 RNGTTO60942 597 aaKnown RBP9.27□□□□□ -0.93
LIG3-201ENST00000262327 HPXP02790 462 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 HRGP04196 525 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 CT62P0C5K7 136 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 TBC1D3HP0C7X1 549 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 CPMP14384 443 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 F8A1P23610 371 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 GABRA3P34903 492 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 CRYZQ08257 329 aaKnown RBP9.27□□□□□ -0.93
LIG3-201ENST00000262327 RIN1Q13671 783 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 NDUFAF6Q330K2 333 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 TBC1D3GQ6DHY5 549 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 TBC1D3CQ6IPX1 549 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 HEPHL1Q6MZM0 1159 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 FBXO42Q6P3S6 717 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 KIAA1324Q6UXG2 1013 aaKnown RBP9.27□□□□□ -0.93
LIG3-201ENST00000262327 TBC1D3Q8IZP1 549 aaPredicted RBP9.27□□□□□ -0.93
LIG3-201ENST00000262327 PIAS4Q8N2W9 510 aaPredicted RBP9.27□□□□□ -0.93
LIG3-201ENST00000262327 FAM98AQ8NCA5 519 aaKnown RBP9.27□□□□□ -0.93
LIG3-201ENST00000262327 ACOT12Q8WYK0 555 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 TSACCQ96A04 125 aaPredicted RBP9.27□□□□□ -0.93
LIG3-201ENST00000262327 TRAF4Q9BUZ4 470 aaPredicted RBP9.27□□□□□ -0.93
LIG3-201ENST00000262327 PHF7Q9BWX1 381 aaPredicted RBP9.27□□□□□ -0.93
LIG3-201ENST00000262327 PITHD1Q9GZP4 211 aaPredicted RBP9.27□□□□□ -0.93
LIG3-201ENST00000262327 FOLH1BQ9HBA9 442 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 SIGLEC7Q9Y286 467 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 ADAM18Q9Y3Q7 739 aa9.27□□□□□ -0.93
LIG3-201ENST00000262327 ARHGEF17Q96PE2 2063 aaPredicted RBP9.26□□□□□ -0.93
LIG3-201ENST00000262327 RIIAD1A6NNX1 92 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 TRIM3O75382 744 aaPredicted RBP9.26□□□□□ -0.93
LIG3-201ENST00000262327 NGFRP08138 427 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 RBMS1P29558 406 aaKnown RBP9.26□□□□□ -0.93
LIG3-201ENST00000262327 IGFALSP35858 605 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 CENPAP49450 140 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 PER3P56645 1201 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 RPL6Q02878 288 aaKnown RBP9.26□□□□□ -0.93
LIG3-201ENST00000262327 PLAURQ03405 335 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 ZBTB37Q5TC79 503 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 GARNL3Q5VVW2 1013 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 ZNF767PQ75MW2 155 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 BMP8AQ7Z5Y6 402 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 ASPGQ86U10 573 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 ZNF527Q8NB42 609 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 ZNF680Q8NEM1 530 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 OR4N2Q8NGD1 307 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 CEP76Q8TAP6 659 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 BRIX1Q8TDN6 353 aaKnown RBP9.26□□□□□ -0.93
LIG3-201ENST00000262327 PATE1Q8WXA2 126 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 ERMAPQ96PL5 475 aaPredicted RBP9.26□□□□□ -0.93
LIG3-201ENST00000262327 C1QTNF6Q9BXI9 259 aa9.26□□□□□ -0.93
LIG3-201ENST00000262327 SPRTNQ9H040 489 aaPredicted RBP9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms