RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 SLC35G3Q8N808 338 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 OR2AK2Q8NG84 335 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 OR5D16Q8NGK9 328 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 OR5M8Q8NGP6 311 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 HMGB4Q8WW32 186 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 TMEM18Q96B42 140 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 MARS2Q96GW9 593 aaKnown RBP5.36□□□□□ -1.55
SCN1A-216ENST00000637968 TP53RKQ96S44 253 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 ALKBH7Q9BT30 221 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF426Q9BUY5 554 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 POLR3FQ9H1D9 316 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-216ENST00000637968 NELFAQ9H3P2 528 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 PLAC1Q9HBJ0 212 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 SLC2A9Q9NRM0 540 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 OPN4Q9UHM6 478 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 SLC7A11Q9UPY5 501 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 DUOX1Q9NRD9 1551 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 ADAMTSL3P82987 1691 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 FMN2Q9NZ56 1722 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 NDUFS3O75489 264 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 GAAP10253 952 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 GTF2F2P13984 249 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 TBPP20226 339 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 ACAA2P42765 397 aaKnown RBP5.36□□□□□ -1.55
SCN1A-216ENST00000637968 RENBPP51606 427 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 TRA2AQ13595 282 aaKnown RBP eCLIP5.36□□□□□ -1.55
SCN1A-216ENST00000637968 VAMP3Q15836 100 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 C10orf120Q5SQS8 335 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 DCST1Q5T197 706 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 CNTN4Q8IWV2 1026 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 ACVR1CQ8NER5 493 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 OR2AP1Q8NGE2 309 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 PROKR1Q8TCW9 393 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 HPSE2Q8WWQ2 592 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 LCN9Q8WX39 176 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 LINC01599Q8WXQ3 324 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 S100A16Q96FQ6 103 aaKnown RBP5.36□□□□□ -1.55
SCN1A-216ENST00000637968 CMTM7Q96FZ5 175 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 KIRREL1Q96J84 757 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 LMF1Q96S06 567 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 SEPT5Q99719 369 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-216ENST00000637968 SRMSQ9H3Y6 488 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 PRDM13Q9H4Q3 707 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 NSUN3Q9H649 340 aaKnown RBP5.36□□□□□ -1.55
SCN1A-216ENST00000637968 SEPSECSQ9HD40 501 aaKnown RBP5.36□□□□□ -1.55
SCN1A-216ENST00000637968 CYP8B1Q9UNU6 501 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 CAMK2AQ9UQM7 478 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 SNX11Q9Y5W9 270 aa5.36□□□□□ -1.55
SCN1A-216ENST00000637968 PUS1Q9Y606 427 aaKnown RBP eCLIP5.36□□□□□ -1.55
SCN1A-216ENST00000637968 PHLPP1O60346 1717 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 TBC1D3KA0A087X1G2 549 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 TRBV11-1A0A0K0K1C0 115 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 GXYLT2A0PJZ3 443 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 TBC1D3FA6NER0 549 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-216ENST00000637968 TRDCB7Z8K6 153 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 F6UZH7 168 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 K7EPK0 472 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 DCTN6O00399 190 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 DVL1O14640 695 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 GCGP01275 180 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 IFNW1P05000 195 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 BPIP17213 487 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 HOXA9P31269 272 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 KIR3DL1P43629 444 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 MTNR1BP49286 362 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 TDGF1P3P51864 188 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 EPHB3P54753 998 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 DGCR2P98153 550 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 PNLIPRP3Q17RR3 467 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 TIGD5Q53EQ6 642 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF585AQ6P3V2 769 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 TRIM40Q6P9F5 258 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 SLC16A14Q7RTX9 510 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 RD3Q7Z3Z2 195 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 FAM71E2Q8N5Q1 922 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 LMNTD1Q8N9Z9 388 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 SUMF2Q8NBJ7 301 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 BRIX1Q8TDN6 353 aaKnown RBP5.35□□□□□ -1.55
SCN1A-216ENST00000637968 RELTQ969Z4 430 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 ATG4CQ96DT6 458 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 WDR89Q96FK6 387 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-216ENST00000637968 FCRL4Q96PJ5 515 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 TAAR1Q96RJ0 339 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 RNF2Q99496 336 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 TAPBPLQ9BX59 468 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 EPHX3Q9H6B9 360 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 TMEM27Q9HBJ8 222 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 LRTM1Q9HBL6 345 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 TAS2R13Q9NYV9 303 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 FZD1Q9UP38 647 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 PCDHB11Q9Y5F2 797 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 SOWAHBA6NEL2 793 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 ANKRD61A6NGH8 418 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 A8MWP6 167 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 UMAD1C9J7I0 102 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 ADM5C9JUS6 153 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 CBR3O75828 277 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 IGHV2-5P01817 119 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 GALTP07902 379 aa5.35□□□□□ -1.55
SCN1A-216ENST00000637968 ITGA5P08648 1049 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms