RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 CCNA2P20248 432 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 APEX1P27695 318 aaKnown RBP12.82□□□□□ -0.36
PNKP-218ENST00000625299 IL2RGP31785 369 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 MAGEA8P43361 318 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 ASMTP46597 345 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 OR2B6P58173 313 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 PRPS1P60891 318 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 RPS26P62854 115 aaKnown RBP12.82□□□□□ -0.36
PNKP-218ENST00000625299 SYT10Q6XYQ8 523 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 OLIG3Q7RTU3 272 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 C17orf78Q8N4C9 275 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 ZNF540Q8NDQ6 660 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 ZNF563Q8TA94 476 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 MTERF3Q96E29 417 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 ARL5BQ96KC2 179 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 KCNS3Q9BQ31 491 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 BHLHE41Q9C0J9 482 aaPredicted RBP12.82□□□□□ -0.36
PNKP-218ENST00000625299 OR11A1Q9GZK7 315 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 CTPS2Q9NRF8 586 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 SLC7A10Q9NS82 523 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 GPATCH2Q9NW75 528 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 TBK1Q9UHD2 729 aa12.82□□□□□ -0.36
PNKP-218ENST00000625299 AZIN1O14977 448 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 SCAMP2O15127 329 aaKnown RBP12.81□□□□□ -0.36
PNKP-218ENST00000625299 SKAP2O75563 359 aaPredicted RBP12.81□□□□□ -0.36
PNKP-218ENST00000625299 C6orf47O95873 294 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 WNT11O96014 354 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 LAMP1P11279 417 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 PGCP20142 388 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 RYKP34925 604 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 SOAT1P35610 550 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 SERPINF1P36955 418 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 NAA20P61599 178 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 ACTG1P63261 375 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 TGFBR3Q03167 851 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 HIKESHIQ53FT3 197 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 CCDC63Q8NA47 563 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 C1orf162Q8NEQ5 155 aaPredicted RBP12.81□□□□□ -0.36
PNKP-218ENST00000625299 ACMSDQ8TDX5 336 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 SNX18Q96RF0 628 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 SDF2Q99470 211 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 GRPEL1Q9HAV7 217 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 ACER3Q9NUN7 267 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 CHRNA9Q9UGM1 479 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 DCDC2Q9UHG0 476 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 DCTN4Q9UJW0 460 aa12.81□□□□□ -0.36
PNKP-218ENST00000625299 PDLIM1O00151 329 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 LSM1O15116 133 aaKnown RBP12.8□□□□□ -0.36
PNKP-218ENST00000625299 CFLARO15519 480 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 KCNAB3O43448 404 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 GLRA3O75311 464 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 PMS2P2O95744 297 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 CHEK2O96017 543 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 BCKDHAP12694 445 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 CHN2P52757 468 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 SLC16A1P53985 500 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 TSPO2Q5TGU0 170 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 BHLHB9Q6PI77 547 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 DDIASQ8IXT1 998 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 C17orf53Q8N3J3 647 aaPredicted RBP12.8□□□□□ -0.36
PNKP-218ENST00000625299 LINC01356Q8N9X3 169 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 OR5P2Q8WZ92 322 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 NMUR2Q9GZQ4 415 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 TUBB1Q9H4B7 451 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 CA10Q9NS85 328 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 GIMAP2Q9UG22 337 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 ATP6V1HQ9UI12 483 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 KCNE5Q9UJ90 142 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 MKLN1Q9UL63 735 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 SLC9A8Q9Y2E8 581 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 TMED5Q9Y3A6 229 aa12.8□□□□□ -0.36
PNKP-218ENST00000625299 B9A039 149 aa12.79□□□□□ -0.36
PNKP-218ENST00000625299 FCMRO60667 390 aa12.79□□□□□ -0.36
PNKP-218ENST00000625299 RGS9O75916 674 aaPredicted RBP12.79□□□□□ -0.36
PNKP-218ENST00000625299 SNUPNO95149 360 aaKnown RBP12.79□□□□□ -0.36
PNKP-218ENST00000625299 VENTXO95231 258 aa12.79□□□□□ -0.36
PNKP-218ENST00000625299 STAMBPO95630 424 aa12.79□□□□□ -0.36
PNKP-218ENST00000625299 PROCP04070 461 aa12.79□□□□□ -0.36
PNKP-218ENST00000625299 OR4A8P0C604 315 aa12.79□□□□□ -0.36
PNKP-218ENST00000625299 DAOP14920 347 aa12.79□□□□□ -0.36
PNKP-218ENST00000625299 ECHS1P30084 290 aa12.79□□□□□ -0.36
PNKP-218ENST00000625299 RPL3P39023 403 aaKnown RBP12.79□□□□□ -0.36
PNKP-218ENST00000625299 APOBEC1P41238 236 aaKnown RBP12.79□□□□□ -0.36
PNKP-218ENST00000625299 DNAJB13P59910 316 aa12.79□□□□□ -0.36
PNKP-218ENST00000625299 CCNIQ14094 377 aa12.79□□□□□ -0.36
PNKP-218ENST00000625299 FAM174BQ3ZCQ3 159 aa12.79□□□□□ -0.36
PNKP-218ENST00000625299 EIF3MQ7L2H7 374 aaKnown RBP12.79□□□□□ -0.36
PNKP-218ENST00000625299 SFXN5Q8TD22 340 aa12.79□□□□□ -0.36
PNKP-218ENST00000625299 CCDC106Q9BWC9 280 aa12.79□□□□□ -0.36
PNKP-218ENST00000625299 RAB1BQ9H0U4 201 aa12.79□□□□□ -0.36
PNKP-218ENST00000625299 METTL17Q9H7H0 456 aaPredicted RBP12.79□□□□□ -0.36
PNKP-218ENST00000625299 PARPBPQ9NWS1 579 aa12.79□□□□□ -0.36
PNKP-218ENST00000625299 PSMC3IPQ9P2W1 217 aaPredicted RBP12.79□□□□□ -0.36
PNKP-218ENST00000625299 METRNQ9UJH8 293 aa12.79□□□□□ -0.36
PNKP-218ENST00000625299 HDGFL3Q9Y3E1 203 aa12.79□□□□□ -0.36
PNKP-218ENST00000625299 FLVCR1Q9Y5Y0 555 aa12.79□□□□□ -0.36
PNKP-218ENST00000625299 IGHV1-18A0A0C4DH31 117 aa12.78□□□□□ -0.36
PNKP-218ENST00000625299 A0A1W2PPM1 405 aa12.78□□□□□ -0.36
PNKP-218ENST00000625299 TMEM114B3SHH9 223 aa12.78□□□□□ -0.36
PNKP-218ENST00000625299 ANKRD28O15084 1053 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms