RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 OIT3Q8WWZ8 545 aa18.13■□□□□ 0.49
SHMT1-209ENST00000582653 KISS1RQ969F8 398 aaPredicted RBP18.13■□□□□ 0.49
SHMT1-209ENST00000582653 ARL5BQ96KC2 179 aa18.13■□□□□ 0.49
SHMT1-209ENST00000582653 TRNT1Q96Q11 434 aaKnown RBP18.13■□□□□ 0.49
SHMT1-209ENST00000582653 ZBTB18Q99592 522 aa18.13■□□□□ 0.49
SHMT1-209ENST00000582653 OR11A1Q9GZK7 315 aa18.13■□□□□ 0.49
SHMT1-209ENST00000582653 TMBIM4Q9HC24 238 aa18.13■□□□□ 0.49
SHMT1-209ENST00000582653 LAMP3Q9UQV4 416 aa18.13■□□□□ 0.49
SHMT1-209ENST00000582653 SLC18A1P54219 525 aa18.12■□□□□ 0.49
SHMT1-209ENST00000582653 DNAJC14Q6Y2X3 702 aaPredicted RBP18.12■□□□□ 0.49
SHMT1-209ENST00000582653 Q6ZT83 130 aa18.12■□□□□ 0.49
SHMT1-209ENST00000582653 GRINAQ7Z429 371 aa18.12■□□□□ 0.49
SHMT1-209ENST00000582653 PIWIL2Q8TC59 973 aaKnown RBP18.12■□□□□ 0.49
SHMT1-209ENST00000582653 SLC25A43Q8WUT9 341 aaPredicted RBP18.12■□□□□ 0.49
SHMT1-209ENST00000582653 TLCD1Q96CP7 247 aa18.12■□□□□ 0.49
SHMT1-209ENST00000582653 EXOSC3Q9NQT5 275 aaKnown RBP18.12■□□□□ 0.49
SHMT1-209ENST00000582653 NKIRAS1Q9NYS0 192 aa18.12■□□□□ 0.49
SHMT1-209ENST00000582653 CHRNA9Q9UGM1 479 aa18.12■□□□□ 0.49
SHMT1-209ENST00000582653 LIPT1Q9Y234 373 aa18.12■□□□□ 0.49
SHMT1-209ENST00000582653 RNF115Q9Y4L5 304 aa18.12■□□□□ 0.49
SHMT1-209ENST00000582653 ROS1P08922 2347 aa18.11■□□□□ 0.49
SHMT1-209ENST00000582653 AGAP5A6NIR3 686 aa18.11■□□□□ 0.49
SHMT1-209ENST00000582653 ZNF724A8MTY0 619 aa18.11■□□□□ 0.49
SHMT1-209ENST00000582653 SLCO1B7G3V0H7 640 aa18.11■□□□□ 0.49
SHMT1-209ENST00000582653 OVOL3O00110 214 aa18.11■□□□□ 0.49
SHMT1-209ENST00000582653 RFXANKO14593 260 aa18.11■□□□□ 0.49
SHMT1-209ENST00000582653 SLC22A3O75751 556 aa18.11■□□□□ 0.49
SHMT1-209ENST00000582653 LYZL6O75951 148 aa18.11■□□□□ 0.49
SHMT1-209ENST00000582653 CD3EP07766 207 aa18.11■□□□□ 0.49
SHMT1-209ENST00000582653 NR2F1P10589 423 aa18.11■□□□□ 0.49
SHMT1-209ENST00000582653 ATP5J2P56134 94 aa18.11■□□□□ 0.49
SHMT1-209ENST00000582653 CSNK2A1P68400 391 aaPredicted RBP18.11■□□□□ 0.49
SHMT1-209ENST00000582653 CAPRIN1Q14444 709 aaKnown RBP18.11■□□□□ 0.49
SHMT1-209ENST00000582653 MAPK11Q15759 364 aa18.11■□□□□ 0.49
SHMT1-209ENST00000582653 BEND6Q5SZJ8 279 aaPredicted RBP18.11■□□□□ 0.49
SHMT1-209ENST00000582653 LRRC74BQ6ZQY2 392 aa18.11■□□□□ 0.49
SHMT1-209ENST00000582653 BHLHA15Q7RTS1 189 aaPredicted RBP18.11■□□□□ 0.49
SHMT1-209ENST00000582653 MTDHQ86UE4 582 aaKnown RBP18.11■□□□□ 0.49
SHMT1-209ENST00000582653 GLB1L3Q8NCI6 653 aaPredicted RBP18.11■□□□□ 0.49
SHMT1-209ENST00000582653 MAELQ96JY0 434 aaKnown RBP18.11■□□□□ 0.49
SHMT1-209ENST00000582653 OR52B2Q96RD2 323 aa18.11■□□□□ 0.49
SHMT1-209ENST00000582653 MTHFD2LQ9H903 347 aaPredicted RBP18.11■□□□□ 0.49
SHMT1-209ENST00000582653 FREM1Q5H8C1 2179 aa18.11■□□□□ 0.49
SHMT1-209ENST00000582653 ABCA2Q9BZC7 2435 aa18.11■□□□□ 0.49
SHMT1-209ENST00000582653 NSD1Q96L73 2696 aaPredicted RBP18.11■□□□□ 0.49
SHMT1-209ENST00000582653 DANCRP0C864 163 aa18.1■□□□□ 0.49
SHMT1-209ENST00000582653 IDO1P14902 403 aa18.1■□□□□ 0.49
SHMT1-209ENST00000582653 ANXA11P50995 505 aaKnown RBP18.1■□□□□ 0.49
SHMT1-209ENST00000582653 MVDP53602 400 aa18.1■□□□□ 0.49
SHMT1-209ENST00000582653 RPS4XP62701 263 aaKnown RBP18.1■□□□□ 0.49
SHMT1-209ENST00000582653 LRRC74AQ0VAA2 488 aa18.1■□□□□ 0.49
SHMT1-209ENST00000582653 PDCD4Q53EL6 469 aaKnown RBP18.1■□□□□ 0.49
SHMT1-209ENST00000582653 GALNT5Q7Z7M9 940 aa18.1■□□□□ 0.49
SHMT1-209ENST00000582653 ZNF100Q8IYN0 542 aa18.1■□□□□ 0.49
SHMT1-209ENST00000582653 NEUROG1Q92886 237 aa18.1■□□□□ 0.49
SHMT1-209ENST00000582653 SPIN1Q9Y657 262 aaPredicted RBP18.1■□□□□ 0.49
SHMT1-209ENST00000582653 PRR14LQ5THK1 2151 aa18.1■□□□□ 0.49
SHMT1-209ENST00000582653 TMED7-TICAM2A0A0A6YYA0 188 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 ZNF716A6NP11 495 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 CLOCKO15516 846 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 RAMP1O60894 148 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 PMS2P2O95744 297 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 IGHV3-9P01782 118 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 IL6P05231 212 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 IL7RP16871 459 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 IGHV1-2P23083 117 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 FKBP2P26885 142 aaKnown RBP18.09■□□□□ 0.49
SHMT1-209ENST00000582653 NTF4P34130 210 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 STK11Q15831 433 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 GTDC1Q4AE62 458 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 ABLIM2Q6H8Q1 611 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 SEZ6L2Q6UXD5 910 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 SSX8Q7RTT4 187 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 CCDC103Q8IW40 242 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 OR9I1Q8NGQ6 314 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 SMAP2Q8WU79 429 aaPredicted RBP18.09■□□□□ 0.49
SHMT1-209ENST00000582653 WDR60Q8WVS4 1066 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 FBXW5Q969U6 566 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 TRMT61AQ96FX7 289 aaKnown RBP18.09■□□□□ 0.49
SHMT1-209ENST00000582653 POTEKPQ9BYX7 375 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 RLIMQ9NVW2 624 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 TMED7Q9Y3B3 224 aa18.09■□□□□ 0.49
SHMT1-209ENST00000582653 TMEM72A0PK05 275 aa18.08■□□□□ 0.48
SHMT1-209ENST00000582653 DPRXA6NFQ7 191 aa18.08■□□□□ 0.48
SHMT1-209ENST00000582653 ERLIN1O75477 346 aa18.08■□□□□ 0.48
SHMT1-209ENST00000582653 KRT75O95678 551 aa18.08■□□□□ 0.48
SHMT1-209ENST00000582653 SOD3P08294 240 aa18.08■□□□□ 0.48
SHMT1-209ENST00000582653 ETFAP13804 333 aa18.08■□□□□ 0.48
SHMT1-209ENST00000582653 RPS4Y1P22090 263 aaKnown RBP18.08■□□□□ 0.48
SHMT1-209ENST00000582653 TACR3P29371 465 aa18.08■□□□□ 0.48
SHMT1-209ENST00000582653 OR2B6P58173 313 aa18.08■□□□□ 0.48
SHMT1-209ENST00000582653 PDK3Q15120 406 aa18.08■□□□□ 0.48
SHMT1-209ENST00000582653 ZNF672Q499Z4 452 aaPredicted RBP18.08■□□□□ 0.48
SHMT1-209ENST00000582653 MRPL2Q5T653 305 aaKnown RBP18.08■□□□□ 0.48
SHMT1-209ENST00000582653 P2RY8Q86VZ1 359 aa18.08■□□□□ 0.48
SHMT1-209ENST00000582653 CMIPQ8IY22 773 aa18.08■□□□□ 0.48
SHMT1-209ENST00000582653 AURKBQ96GD4 344 aaPredicted RBP18.08■□□□□ 0.48
SHMT1-209ENST00000582653 SDR39U1Q9NRG7 319 aaPredicted RBP18.08■□□□□ 0.48
SHMT1-209ENST00000582653 OSGIN1Q9UJX0 560 aa18.08■□□□□ 0.48
SHMT1-209ENST00000582653 NOSIPQ9Y314 301 aaKnown RBP18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms