RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 TRIM77I1YAP6 450 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 KLF11O14901 512 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 RGS9O75916 674 aaPredicted RBP11.08□□□□□ -0.64
SS18-219ENST00000581570 PDE5AO76074 875 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 PMS2P2O95744 297 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 ERCC1P07992 297 aaPredicted RBP11.08□□□□□ -0.64
SS18-219ENST00000581570 SNRPAP09012 282 aaKnown RBP11.08□□□□□ -0.64
SS18-219ENST00000581570 IFNGR1P15260 489 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 PGCP20142 388 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 MPGP29372 298 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 MAGEA8P43361 318 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 SCGB2A2Q13296 93 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 PDE7AQ13946 482 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 TRIP10Q15642 601 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 EFNB3Q15768 340 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 TSPO2Q5TGU0 170 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 PEG10Q86TG7 708 aaKnown RBP11.08□□□□□ -0.64
SS18-219ENST00000581570 GLCCI1Q86VQ1 547 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 ZNF786Q8N393 782 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 DNAJA3Q96EY1 480 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 TSSK3Q96PN8 268 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 SAP130Q9H0E3 1048 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 ZDHHC18Q9NUE0 388 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 ACER3Q9NUN7 267 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 C1orf109Q9NX04 203 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 ZNF180Q9UJW8 692 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 FBXO9Q9UK97 447 aaPredicted RBP11.08□□□□□ -0.64
SS18-219ENST00000581570 PCDHB10Q9UN67 800 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 FAF1Q9UNN5 650 aaPredicted RBP11.08□□□□□ -0.64
SS18-219ENST00000581570 CCL27Q9Y4X3 112 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 SPIN1Q9Y657 262 aaPredicted RBP11.08□□□□□ -0.64
SS18-219ENST00000581570 ARFGEF3Q5TH69 2177 aa11.08□□□□□ -0.64
SS18-219ENST00000581570 IGHV1-18A0A0C4DH31 117 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 B4DSR2 109 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 DNPH1O43598 174 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 DNAJA2O60884 412 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 CRYAAP02489 173 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 GSTA1P08263 222 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 CDH2P19022 906 aaPredicted RBP11.07□□□□□ -0.64
SS18-219ENST00000581570 OR2B6P58173 313 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 SKP2Q13309 424 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 CCNIQ14094 377 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 HIKESHIQ53FT3 197 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 PRR31Q5SQ13 230 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 PDZK1Q5T2W1 519 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 CLHC1Q8NHS4 586 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 UBASH3BQ8TF42 649 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 WDR60Q8WVS4 1066 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 ARL5BQ96KC2 179 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 SLC38A2Q96QD8 506 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 CCT7Q99832 543 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 RBM4Q9BWF3 364 aaKnown RBP11.07□□□□□ -0.64
SS18-219ENST00000581570 BAIAP2L1Q9UHR4 511 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 SLC9A8Q9Y2E8 581 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 HDGFL3Q9Y3E1 203 aa11.07□□□□□ -0.64
SS18-219ENST00000581570 H3BQF6 201 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 SLC28A1O00337 649 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 KRT16P08779 473 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 DDX5P17844 614 aaKnown RBP11.06□□□□□ -0.64
SS18-219ENST00000581570 SDC1P18827 310 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 PRPH2P23942 346 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 APOBEC1P41238 236 aaKnown RBP11.06□□□□□ -0.64
SS18-219ENST00000581570 SLC1A3P43003 542 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 CCT3P49368 545 aaKnown RBP11.06□□□□□ -0.64
SS18-219ENST00000581570 PRSS12P56730 875 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 DEFA6Q01524 100 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 SLC7A5Q01650 507 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 TP53BP2Q13625 1128 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 RIN1Q13671 783 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 SHQ1Q6PI26 577 aaKnown RBP11.06□□□□□ -0.64
SS18-219ENST00000581570 THSD4Q6ZMP0 1018 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 TIFABQ6ZNK6 161 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 RELL1Q8IUW5 271 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 ZCCHC24Q8N2G6 241 aaKnown RBP11.06□□□□□ -0.64
SS18-219ENST00000581570 SDF2Q99470 211 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 KATNB1Q9BVA0 655 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 CDC42EP4Q9H3Q1 356 aaKnown RBP11.06□□□□□ -0.64
SS18-219ENST00000581570 OBP2BQ9NPH6 170 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 CTPS2Q9NRF8 586 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 HIF1ANQ9NWT6 349 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 CHRNA9Q9UGM1 479 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 FLVCR1Q9Y5Y0 555 aa11.06□□□□□ -0.64
SS18-219ENST00000581570 HEATR1Q9H583 2144 aaKnown RBP11.06□□□□□ -0.64
SS18-219ENST00000581570 TENM1Q9UKZ4 2725 aa11.05□□□□□ -0.64
SS18-219ENST00000581570 VSTM5A8MXK1 200 aa11.05□□□□□ -0.64
SS18-219ENST00000581570 hCG_2039718K7EN88 272 aa11.05□□□□□ -0.64
SS18-219ENST00000581570 ANKRD28O15084 1053 aa11.05□□□□□ -0.64
SS18-219ENST00000581570 CSTAP01040 98 aa11.05□□□□□ -0.64
SS18-219ENST00000581570 UBTFL6P0CB48 400 aaPredicted RBP11.05□□□□□ -0.64
SS18-219ENST00000581570 UROSP10746 265 aa11.05□□□□□ -0.64
SS18-219ENST00000581570 FKBP2P26885 142 aaKnown RBP11.05□□□□□ -0.64
SS18-219ENST00000581570 CLK1P49759 484 aaKnown RBP11.05□□□□□ -0.64
SS18-219ENST00000581570 HILS1P60008 231 aa11.05□□□□□ -0.64
SS18-219ENST00000581570 H3F3AP84243 136 aa11.05□□□□□ -0.64
SS18-219ENST00000581570 NAAAQ02083 359 aa11.05□□□□□ -0.64
SS18-219ENST00000581570 GPR68Q15743 365 aa11.05□□□□□ -0.64
SS18-219ENST00000581570 SPDYE7PQ495Y7 208 aa11.05□□□□□ -0.64
SS18-219ENST00000581570 AWAT1Q58HT5 328 aa11.05□□□□□ -0.64
SS18-219ENST00000581570 ANKRD16Q6P6B7 361 aa11.05□□□□□ -0.64
SS18-219ENST00000581570 USP43Q70EL4 1123 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms