RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 GP1BBP13224 206 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 NQO1P15559 274 aaKnown RBP8.35□□□□□ -1.07
VPS35-211ENST00000569950 EIF1P41567 113 aaKnown RBP8.35□□□□□ -1.07
VPS35-211ENST00000569950 YAP1P46937 504 aaKnown RBP8.35□□□□□ -1.07
VPS35-211ENST00000569950 LIMS1P48059 325 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 ZNF41P51814 821 aaPredicted RBP8.35□□□□□ -1.07
VPS35-211ENST00000569950 RAC1P63000 192 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 KCNC4Q03721 635 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 LTBQ06643 244 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 MERTKQ12866 999 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 FLOT2Q14254 428 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 BCL2A1Q16548 175 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 ARHGAP11AQ6P4F7 1023 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 ZNF613Q6PF04 617 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 DEF8Q6ZN54 512 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 GDF7Q7Z4P5 450 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 DOLPP1Q86YN1 238 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 NKAIN4Q8IVV8 208 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 OFCC1Q8IZS5 231 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 CADM2Q8N3J6 435 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 MARVELD2Q8N4S9 558 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 PIK3C3Q8NEB9 887 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 FAM57AQ8TBR7 257 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 SLC26A7Q8TE54 656 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 ABTB1Q969K4 478 aaPredicted RBP8.35□□□□□ -1.07
VPS35-211ENST00000569950 RELTQ969Z4 430 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 MCUR1Q96AQ8 359 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 PRRC1Q96M27 445 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 SFXN2Q96NB2 322 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 ZNF300Q96RE9 604 aaPredicted RBP8.35□□□□□ -1.07
VPS35-211ENST00000569950 PIGQQ9BRB3 760 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 DENND2DQ9H6A0 471 aaPredicted RBP8.35□□□□□ -1.07
VPS35-211ENST00000569950 TMEM185BQ9H7F4 350 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 C12orf10Q9HB07 376 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 IL1RAPQ9NPH3 570 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 MEPEQ9NQ76 525 aaPredicted RBP8.35□□□□□ -1.07
VPS35-211ENST00000569950 AGPAT4Q9NRZ5 378 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 CHRNA9Q9UGM1 479 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 TMED7Q9Y3B3 224 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 TRAPPC13A5PLN9 417 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 NPIPA2E9PIF3 369 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 NPIPA3F8WFD2 350 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 H3BML4 177 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 PYCARD-AS1I3L0S3 204 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 ZNF208O43345 1280 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 CHP2O43745 196 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 SLC19A2O60779 497 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 OR5F1O95221 314 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 IFNW1P05000 195 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 PTNP21246 168 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 APOBEC1P41238 236 aaKnown RBP8.34□□□□□ -1.07
VPS35-211ENST00000569950 P2RY4P51582 365 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 POLR2HP52434 150 aaKnown RBP8.34□□□□□ -1.07
VPS35-211ENST00000569950 UGT2B15P54855 530 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 ACTR3P61158 418 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 SRSF1Q07955 248 aaKnown RBP eCLIP8.34□□□□□ -1.07
VPS35-211ENST00000569950 SELENBP1Q13228 472 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 FHL1Q13642 323 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 KPNB1Q14974 876 aaKnown RBP8.34□□□□□ -1.07
VPS35-211ENST00000569950 TOMM20Q15388 145 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 SEC23BQ15437 767 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 GXYLT1Q4G148 440 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 SWT1Q5T5J6 900 aaKnown RBP8.34□□□□□ -1.07
VPS35-211ENST00000569950 ULK3Q6PHR2 472 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 GFRALQ6UXV0 394 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 NHLRC1Q6VVB1 395 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 NCCRP1Q6ZVX7 275 aaPredicted RBP8.34□□□□□ -1.07
VPS35-211ENST00000569950 P3H2Q8IVL5 708 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 LILRA2Q8N149 483 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 GALNT11Q8NCW6 608 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 OR5M9Q8NGP3 310 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 ZNF563Q8TA94 476 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 TMEM234Q8WY98 164 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 LZICQ8WZA0 190 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 SLC41A3Q96GZ6 507 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 ZNF845Q96IR2 970 aaPredicted RBP8.34□□□□□ -1.07
VPS35-211ENST00000569950 DMRTA2Q96SC8 542 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 SEPHS2Q99611 448 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 TUBA1CQ9BQE3 449 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 SRXN1Q9BYN0 137 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 ARMC7Q9H6L4 198 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 MAGIXQ9H6Y5 334 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 NTN4Q9HB63 628 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 CCM2LQ9NUG4 571 aaPredicted RBP8.34□□□□□ -1.07
VPS35-211ENST00000569950 KLHL28Q9NXS3 571 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 RHCGQ9UBD6 479 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 CLCF1Q9UBD9 225 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 RIMS3Q9UJD0 308 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 ING1Q9UK53 422 aaPredicted RBP8.34□□□□□ -1.07
VPS35-211ENST00000569950 SLC9A8Q9Y2E8 581 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 AP4B1Q9Y6B7 739 aa8.34□□□□□ -1.07
VPS35-211ENST00000569950 PTPN13Q12923 2485 aa8.34□□□□□ -1.08
VPS35-211ENST00000569950 A0A1W2PNR3 127 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 DHRS12A0PJE2 317 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 LINC01387J3KSC0 135 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 PIP5K1CO60331 668 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 RAMP1O60894 148 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 TOXO94900 526 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 TGM6O95932 706 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 STSP08842 583 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms