RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 CLEC12BQ2HXU8 276 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 GPAT3Q53EU6 434 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 TNFAIP8L3Q5GJ75 292 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 FBXW9Q5XUX1 488 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 OGFOD2Q6N063 350 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 SSX8Q7RTT4 187 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 GRINAQ7Z429 371 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 HMGN2P46Q86SG4 172 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 P2RY8Q86VZ1 359 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 ADGRG3Q86Y34 549 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 ZNF433Q8N7K0 673 aaPredicted RBP14.2□□□□□ -0.14
CLN3-229ENST00000567963 TEX37Q96LM6 180 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 CCDC115Q96NT0 180 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 PARD6BQ9BYG5 372 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 PNPOQ9NVS9 261 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 EMC3Q9P0I2 261 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 BTNL2Q9UIR0 455 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 LIPT1Q9Y234 373 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 HDGFL3Q9Y3E1 203 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 DNHD1Q96M86 4753 aa14.19□□□□□ -0.14
CLN3-229ENST00000567963 A0A1W2PP18 115 aa14.19□□□□□ -0.14
CLN3-229ENST00000567963 ALDOCP09972 364 aaKnown RBP14.19□□□□□ -0.14
CLN3-229ENST00000567963 IDUAP35475 653 aa14.19□□□□□ -0.14
CLN3-229ENST00000567963 CDKN1AP38936 164 aa14.19□□□□□ -0.14
CLN3-229ENST00000567963 CLK1P49759 484 aaKnown RBP14.19□□□□□ -0.14
CLN3-229ENST00000567963 ARFGAP2Q8N6H7 521 aa14.19□□□□□ -0.14
CLN3-229ENST00000567963 GTPBP3Q969Y2 492 aaKnown RBP14.19□□□□□ -0.14
CLN3-229ENST00000567963 ZHX1-C8orf76Q96EF9 292 aa14.19□□□□□ -0.14
CLN3-229ENST00000567963 DNAJA3Q96EY1 480 aa14.19□□□□□ -0.14
CLN3-229ENST00000567963 KCNK9Q9NPC2 374 aa14.19□□□□□ -0.14
CLN3-229ENST00000567963 CISD1Q9NZ45 108 aaKnown RBP14.19□□□□□ -0.14
CLN3-229ENST00000567963 NOSIPQ9Y314 301 aaKnown RBP14.19□□□□□ -0.14
CLN3-229ENST00000567963 OR5H1A6NKK0 313 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 SHISA9B4DS77 424 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 DNPH1O43598 174 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 CD8AP01732 235 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 THBS1P07996 1170 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 NTF4P34130 210 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 IDH2P48735 452 aaKnown RBP14.18□□□□□ -0.14
CLN3-229ENST00000567963 NME5P56597 212 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 UFM1P61960 85 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 HPCAP84074 193 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 VEZF1Q14119 521 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 SYPL1Q16563 259 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 RNF130Q86XS8 419 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 CCDC103Q8IW40 242 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 UBE2J2Q8N2K1 259 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 CNOT9Q92600 299 aaKnown RBP14.18□□□□□ -0.14
CLN3-229ENST00000567963 TRNT1Q96Q11 434 aaKnown RBP14.18□□□□□ -0.14
CLN3-229ENST00000567963 PANX1Q96RD7 426 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 OR11A1Q9GZK7 315 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 CENPHQ9H3R5 247 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 NPAP1Q9NZP6 1156 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 JMJD1CQ15652 2540 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 GOLGA8QA0A0J9YX86 632 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 GOLGA8OA6NCC3 632 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 CCDC154A6NI56 674 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 GOLGA8NF8WBI6 632 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 GPR171O14626 319 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 IGHV3-9P01782 118 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 IL12AP29459 219 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 HTR3AP46098 478 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 SLC16A1P53985 500 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 H3F3AP84243 136 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 BST1Q10588 318 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 CEP85LQ5SZL2 805 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 CMIPQ8IY22 773 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 TRIML2Q8N7C3 387 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 ANKFN1Q8N957 763 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 PIGXQ8TBF5 258 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 APH1AQ96BI3 265 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 TRAF4Q9BUZ4 470 aaPredicted RBP14.18□□□□□ -0.14
CLN3-229ENST00000567963 GRIP2Q9C0E4 1043 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 SLC38A1Q9H2H9 487 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 AIG1Q9NVV5 245 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 TMEM181Q9P2C4 612 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 TRAPPC4Q9Y296 219 aa14.18□□□□□ -0.14
CLN3-229ENST00000567963 AGAP5A6NIR3 686 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 KIAA1324LA8MWY0 1029 aaPredicted RBP14.17□□□□□ -0.14
CLN3-229ENST00000567963 RNF223E7ERA6 249 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 SDHDO14521 159 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 ABCD4O14678 606 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 MRPL33O75394 65 aaKnown RBP14.17□□□□□ -0.14
CLN3-229ENST00000567963 RAD51DO75771 328 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 PGRP06401 933 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 CHRM4P08173 479 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 CCNA2P20248 432 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 ACVR1BP36896 505 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 CDKN2CP42773 168 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 TXNL4AP83876 142 aaKnown RBP14.17□□□□□ -0.14
CLN3-229ENST00000567963 KRTAP1-1Q07627 177 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 FAPQ12884 760 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 LRRC74BQ6ZQY2 392 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 ZNF621Q6ZSS3 439 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 SPATA19Q7Z5L4 167 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 DTX2Q86UW9 622 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 MAPK1IP1LQ8NDC0 245 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 ZBTB9Q96C00 473 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 RADILQ96JH8 1075 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 OR52E6Q96RD3 313 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms