RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 RAMP1O60894 148 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 TGDSO95455 350 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 PMS2P2O95744 297 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 ADAP00813 363 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 DBIP07108 87 aaKnown RBP13.17□□□□□ -0.3
CLN3-213ENST00000565047 FESP07332 822 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 NR2F1P10589 423 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 FKBP2P26885 142 aaKnown RBP13.17□□□□□ -0.3
CLN3-213ENST00000565047 POLR2JP52435 117 aaKnown RBP13.17□□□□□ -0.3
CLN3-213ENST00000565047 EPS8Q12929 822 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 ITGADQ13349 1161 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 TAB1Q15750 504 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 MRPL2Q5T653 305 aaKnown RBP13.17□□□□□ -0.3
CLN3-213ENST00000565047 Q6ZT83 130 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 STEAP2Q8NFT2 490 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 ZNF563Q8TA94 476 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 ZNF775Q96BV0 537 aaPredicted RBP13.17□□□□□ -0.3
CLN3-213ENST00000565047 AURKBQ96GD4 344 aaPredicted RBP13.17□□□□□ -0.3
CLN3-213ENST00000565047 EBF4Q9BQW3 602 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 OR11A1Q9GZK7 315 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 RLIMQ9NVW2 624 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 OSGIN1Q9UJX0 560 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 HDGFL3Q9Y3E1 203 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 PCDHB14Q9Y5E9 798 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 C2CD3Q4AC94 2353 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 FAM234BA2RU67 622 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 ZNF208O43345 1280 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 DNPH1O43598 174 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 IMPDH2P12268 514 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 BMP2P12643 396 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 PAX1P15863 534 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 COX5AP20674 150 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 FPR1P21462 350 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 SLC1A3P43003 542 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 IDH3AP50213 366 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 SLC16A1P53985 500 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 PPP2R2AP63151 447 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 CSNK2A1P68400 391 aaPredicted RBP13.16□□□□□ -0.3
CLN3-213ENST00000565047 NKX6-1P78426 367 aaPredicted RBP13.16□□□□□ -0.3
CLN3-213ENST00000565047 HPCAP84074 193 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 SHEQ5VZ18 495 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 DNAJC14Q6Y2X3 702 aaPredicted RBP13.16□□□□□ -0.3
CLN3-213ENST00000565047 ZNF704Q6ZNC4 412 aaPredicted RBP13.16□□□□□ -0.3
CLN3-213ENST00000565047 C20orf204Q6ZNR8 217 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 ATG4DQ86TL0 474 aaPredicted RBP13.16□□□□□ -0.3
CLN3-213ENST00000565047 VRK2Q86Y07 508 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 MSRB3Q8IXL7 192 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 MIER2Q8N344 545 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 WDR60Q8WVS4 1066 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 PIGTQ969N2 578 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 PLPPR2Q96GM1 343 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 ITCHQ96J02 903 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 ATP6V1G3Q96LB4 118 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 GSX1Q9H4S2 264 aaPredicted RBP13.16□□□□□ -0.3
CLN3-213ENST00000565047 FANCFQ9NPI8 374 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 PRDM4Q9UKN5 801 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 TRAPPC4Q9Y296 219 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 GMEB1Q9Y692 573 aa13.16□□□□□ -0.3
CLN3-213ENST00000565047 ANK3Q12955 4377 aaKnown RBP13.15□□□□□ -0.3
CLN3-213ENST00000565047 ROS1P08922 2347 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 TMED7-TICAM2A0A0A6YYA0 188 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 TMEM72A0PK05 275 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 ZC3H12DA2A288 527 aaKnown RBP13.15□□□□□ -0.3
CLN3-213ENST00000565047 CFAP73A6NFT4 308 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 DIAPH2O60879 1101 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 PGM3O95394 542 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 CNOT4O95628 575 aaKnown RBP13.15□□□□□ -0.3
CLN3-213ENST00000565047 NUDT7P0C024 238 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 IL7RP16871 459 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 IGHV1-2P23083 117 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 TACR3P29371 465 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 HTR3AP46098 478 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 ANXA11P50995 505 aaKnown RBP13.15□□□□□ -0.3
CLN3-213ENST00000565047 POLR2HP52434 150 aaKnown RBP13.15□□□□□ -0.3
CLN3-213ENST00000565047 NR1H2P55055 460 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 NCMAPQ5T1S8 102 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 LRIF1Q5T3J3 769 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 ADAM5Q6NVV9 412 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 SLC2A7Q6PXP3 512 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 BLOC1S3Q6QNY0 202 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 ZNF836Q6ZNA1 936 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 WFDC8Q8IUA0 241 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 CCDC103Q8IW40 242 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 C10orf111Q8N326 155 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 CLIP4Q8N3C7 705 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 HSD17B8Q92506 261 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 TMEM19Q96HH6 336 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 USB1Q9BQ65 265 aaKnown RBP13.15□□□□□ -0.3
CLN3-213ENST00000565047 UBTD1Q9HAC8 227 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 SLC25A37Q9NYZ2 338 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 SLAMF8Q9P0V8 285 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 TMEM181Q9P2C4 612 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 P2RX2Q9UBL9 471 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 TMED7Q9Y3B3 224 aa13.15□□□□□ -0.3
CLN3-213ENST00000565047 SPIN1Q9Y657 262 aaPredicted RBP13.15□□□□□ -0.3
CLN3-213ENST00000565047 TRBV5-3A0A0A0MS03 114 aa13.14□□□□□ -0.31
CLN3-213ENST00000565047 BCHEP06276 602 aa13.14□□□□□ -0.31
CLN3-213ENST00000565047 TFPIP10646 304 aa13.14□□□□□ -0.31
CLN3-213ENST00000565047 CRATP43155 626 aa13.14□□□□□ -0.31
CLN3-213ENST00000565047 MAP2K6P52564 334 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms