RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 HDHD5Q9BXW7 423 aa9.59□□□□□ -0.87
VPS39-208ENST00000564994 SDR39U1Q9NRG7 319 aaPredicted RBP9.59□□□□□ -0.87
VPS39-208ENST00000564994 NKIRAS1Q9NYS0 192 aa9.59□□□□□ -0.87
VPS39-208ENST00000564994 CHRNA9Q9UGM1 479 aa9.59□□□□□ -0.87
VPS39-208ENST00000564994 LIPT1Q9Y234 373 aa9.59□□□□□ -0.87
VPS39-208ENST00000564994 ANK3Q12955 4377 aaKnown RBP9.58□□□□□ -0.88
VPS39-208ENST00000564994 HEATR1Q9H583 2144 aaKnown RBP9.58□□□□□ -0.88
VPS39-208ENST00000564994 IGKV3D-15A0A087WSY6 115 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 ZNF716A6NP11 495 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 ZNF724A8MTY0 619 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 RFXANKO14593 260 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 HS3ST1O14792 307 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 KLF11O14901 512 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 RAMP1O60894 148 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 LYZL6O75951 148 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 PMS2P2O95744 297 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 IL6P05231 212 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 TFPIP10646 304 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 ETFAP13804 333 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 CCNA2P20248 432 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 IGHV1-2P23083 117 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 IL32P24001 234 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 PTH2RP49190 550 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 CSNK2A1P68400 391 aaPredicted RBP9.58□□□□□ -0.88
VPS39-208ENST00000564994 LRRC74AQ0VAA2 488 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 P2RY6Q15077 328 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 GSTA3Q16772 222 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 NCMAPQ5T1S8 102 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 MRPL2Q5T653 305 aaKnown RBP9.58□□□□□ -0.88
VPS39-208ENST00000564994 Q6ZT83 130 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 BHLHA15Q7RTS1 189 aaPredicted RBP9.58□□□□□ -0.88
VPS39-208ENST00000564994 YTHDF3Q7Z739 585 aaKnown RBP9.58□□□□□ -0.88
VPS39-208ENST00000564994 MTDHQ86UE4 582 aaKnown RBP9.58□□□□□ -0.88
VPS39-208ENST00000564994 CMIPQ8IY22 773 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 ZNF611Q8N823 705 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 PIWIL2Q8TC59 973 aaKnown RBP9.58□□□□□ -0.88
VPS39-208ENST00000564994 WDR60Q8WVS4 1066 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 KISS1RQ969F8 398 aaPredicted RBP9.58□□□□□ -0.88
VPS39-208ENST00000564994 VPS33AQ96AX1 596 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 GSX2Q9BZM3 304 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 MTHFD2LQ9H903 347 aaPredicted RBP9.58□□□□□ -0.88
VPS39-208ENST00000564994 RLIMQ9NVW2 624 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 ZIM2Q9NZV7 527 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 OSGIN1Q9UJX0 560 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 HDGFL3Q9Y3E1 203 aa9.58□□□□□ -0.88
VPS39-208ENST00000564994 SPIN1Q9Y657 262 aaPredicted RBP9.58□□□□□ -0.88
VPS39-208ENST00000564994 DSPPQ9NZW4 1301 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 TMED7-TICAM2A0A0A6YYA0 188 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 TMEM72A0PK05 275 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 ZC3H12DA2A288 527 aaKnown RBP9.57□□□□□ -0.88
VPS39-208ENST00000564994 ARHGEF9O43307 516 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 ERLIN1O75477 346 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 KRT75O95678 551 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 IGHV3-9P01782 118 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 DBIP07108 87 aaKnown RBP9.57□□□□□ -0.88
VPS39-208ENST00000564994 INHBBP09529 407 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 TFPTP0C1Z6 253 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 ZCCHC18P0CG32 403 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 NR2F1P10589 423 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 IMPDH2P12268 514 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 IL7RP16871 459 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 COX5AP20674 150 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 ANXA11P50995 505 aaKnown RBP9.57□□□□□ -0.88
VPS39-208ENST00000564994 TXNL4AP83876 142 aaKnown RBP9.57□□□□□ -0.88
VPS39-208ENST00000564994 H3F3AP84243 136 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 PDK3Q15120 406 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 EPGNQ6UW88 154 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 PRSS57Q6UWY2 283 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 Q71RC1 249 aaPredicted RBP9.57□□□□□ -0.88
VPS39-208ENST00000564994 GALNT5Q7Z7M9 940 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 BIVMQ86UB2 503 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 VRK2Q86Y07 508 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 CCDC103Q8IW40 242 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 HSD17B8Q92506 261 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 AKAP1Q92667 903 aaKnown RBP eCLIP9.57□□□□□ -0.88
VPS39-208ENST00000564994 NEUROG1Q92886 237 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 AURKBQ96GD4 344 aaPredicted RBP9.57□□□□□ -0.88
VPS39-208ENST00000564994 Q96MF0 132 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 POTEKPQ9BYX7 375 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 TPT1P8Q9HAU6 139 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 TMED7Q9Y3B3 224 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 CHST2Q9Y4C5 530 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 USH1CQ9Y6N9 552 aa9.57□□□□□ -0.88
VPS39-208ENST00000564994 CDHR4A6H8M9 788 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 DPRXA6NFQ7 191 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 CFAP73A6NFT4 308 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 TRIM64A6NGJ6 449 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 TRIM64BA6NI03 449 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 H7C1Q1 480 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 FAAHO00519 579 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 UBDO15205 165 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 DNPH1O43598 174 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 ANP32DO95626 131 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 BCHEP06276 602 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 GKN3PP0CG01 181 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 PAX1P15863 534 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 HOXB9P17482 250 aaPredicted RBP9.56□□□□□ -0.88
VPS39-208ENST00000564994 TACR3P29371 465 aa9.56□□□□□ -0.88
VPS39-208ENST00000564994 ADSLP30566 484 aaPredicted RBP9.56□□□□□ -0.88
VPS39-208ENST00000564994 ACAA2P42765 397 aaKnown RBP9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms