RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 ZDHHC2Q9UIJ5 367 aa11.44□□□□□ -0.58
SF3B3-202ENST00000562722 SLC35A3Q9Y2D2 325 aa11.44□□□□□ -0.58
SF3B3-202ENST00000562722 WDR45Q9Y484 360 aa11.44□□□□□ -0.58
SF3B3-202ENST00000562722 ATP23Q9Y6H3 246 aa11.44□□□□□ -0.58
SF3B3-202ENST00000562722 ATRQ13535 2644 aa11.44□□□□□ -0.58
SF3B3-202ENST00000562722 FBN1P35555 2871 aaKnown RBP11.43□□□□□ -0.58
SF3B3-202ENST00000562722 FREM1Q5H8C1 2179 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 IGKV3D-15A0A087WSY6 115 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 ANKRD28O15084 1053 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 CPSF4O95639 269 aaKnown RBP11.43□□□□□ -0.58
SF3B3-202ENST00000562722 AGR2O95994 175 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 CD40P25942 277 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 MAGEA8P43361 318 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 CLDN8P56748 225 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 IFFO1Q0D2I5 559 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 PDK3Q15120 406 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 C9orf135Q5VTT2 229 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 TNFAIP8L2Q6P589 184 aaPredicted RBP11.43□□□□□ -0.58
SF3B3-202ENST00000562722 CASP12Q6UXS9 341 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 GRINAQ7Z429 371 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 HMGN2P46Q86SG4 172 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 ANKRD46Q86W74 232 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 ZNF525Q8N782 197 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 XAGE5Q8WWM1 108 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 RAB8BQ92930 207 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 TNFRSF13CQ96RJ3 184 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 KCNK17Q96T54 332 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 OR11A1Q9GZK7 315 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 UPB1Q9UBR1 384 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 CDC42EP3Q9UKI2 254 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 SLC25A15Q9Y619 301 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 CR1P17927 2039 aa11.43□□□□□ -0.58
SF3B3-202ENST00000562722 GOLGA8QA0A0J9YX86 632 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 GOLGA8OA6NCC3 632 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 ZNF716A6NP11 495 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 GOLGA8NF8WBI6 632 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 RNASET2O00584 256 aaKnown RBP11.42□□□□□ -0.58
SF3B3-202ENST00000562722 PHF1O43189 567 aaPredicted RBP11.42□□□□□ -0.58
SF3B3-202ENST00000562722 KIAA0513O60268 411 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 DNAJA2O60884 412 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 PMS2P2O95744 297 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 FAM157CP0CG43 387 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 BMP4P12644 408 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 ARRB2P32121 409 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 CHI3L1P36222 383 aaPredicted RBP11.42□□□□□ -0.58
SF3B3-202ENST00000562722 PGM1P36871 562 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 EMX2Q04743 252 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 PDCD2Q16342 344 aaPredicted RBP11.42□□□□□ -0.58
SF3B3-202ENST00000562722 MAPK14Q16539 360 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 GPAT3Q53EU6 434 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 OR7E24Q6IFN5 339 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 TYW3Q6IPR3 259 aaKnown RBP11.42□□□□□ -0.58
SF3B3-202ENST00000562722 C11orf71Q6IPW1 123 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 B3GLCTQ6Y288 498 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 CCDC103Q8IW40 242 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 RIBC1Q8N443 379 aaPredicted RBP11.42□□□□□ -0.58
SF3B3-202ENST00000562722 ARFGAP2Q8N6H7 521 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 OR10H5Q8NGA6 315 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 OR52E4Q8NGH9 312 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 FAM168AQ92567 244 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 ROPN1LQ96C74 230 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 ARL5BQ96KC2 179 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 INPP5KQ9BT40 448 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 CCDC106Q9BWC9 280 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 BEX2Q9BXY8 128 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 DPY30Q9C005 99 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 FKRPQ9H9S5 495 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 MALT1Q9UDY8 824 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 HDGFL3Q9Y3E1 203 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 ABCA1O95477 2261 aa11.42□□□□□ -0.58
SF3B3-202ENST00000562722 DNPH1O43598 174 aa11.41□□□□□ -0.58
SF3B3-202ENST00000562722 BCAS1O75363 584 aaPredicted RBP11.41□□□□□ -0.58
SF3B3-202ENST00000562722 SLC25A16P16260 332 aa11.41□□□□□ -0.58
SF3B3-202ENST00000562722 UQCRC2P22695 453 aa11.41□□□□□ -0.58
SF3B3-202ENST00000562722 FKBP2P26885 142 aaKnown RBP11.41□□□□□ -0.58
SF3B3-202ENST00000562722 IDH2P48735 452 aaKnown RBP11.41□□□□□ -0.58
SF3B3-202ENST00000562722 KHKP50053 298 aa11.41□□□□□ -0.58
SF3B3-202ENST00000562722 CHRNB3Q05901 458 aa11.41□□□□□ -0.58
SF3B3-202ENST00000562722 LOXL1Q08397 574 aaPredicted RBP11.41□□□□□ -0.58
SF3B3-202ENST00000562722 GABRA6Q16445 453 aa11.41□□□□□ -0.58
SF3B3-202ENST00000562722 ZNF544Q6NX49 715 aa11.41□□□□□ -0.58
SF3B3-202ENST00000562722 EMBQ6PCB8 327 aa11.41□□□□□ -0.58
SF3B3-202ENST00000562722 KLHL24Q6TFL4 600 aa11.41□□□□□ -0.58
SF3B3-202ENST00000562722 VPS37AQ8NEZ2 397 aa11.41□□□□□ -0.58
SF3B3-202ENST00000562722 DDIT4LQ96D03 193 aa11.41□□□□□ -0.58
SF3B3-202ENST00000562722 NAA11Q9BSU3 229 aaPredicted RBP11.41□□□□□ -0.58
SF3B3-202ENST00000562722 POLE3Q9NRF9 147 aa11.41□□□□□ -0.58
SF3B3-202ENST00000562722 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.41□□□□□ -0.58
SF3B3-202ENST00000562722 TMEM181Q9P2C4 612 aa11.41□□□□□ -0.58
SF3B3-202ENST00000562722 CUBNO60494 3623 aa11.41□□□□□ -0.58
SF3B3-202ENST00000562722 CADP27708 2225 aa11.4□□□□□ -0.58
SF3B3-202ENST00000562722 CLDN24A6NM45 220 aa11.4□□□□□ -0.58
SF3B3-202ENST00000562722 BPGMP07738 259 aa11.4□□□□□ -0.58
SF3B3-202ENST00000562722 ITGA5P08648 1049 aa11.4□□□□□ -0.58
SF3B3-202ENST00000562722 CSF3P09919 207 aa11.4□□□□□ -0.58
SF3B3-202ENST00000562722 ZNF16P17020 682 aaPredicted RBP11.4□□□□□ -0.58
SF3B3-202ENST00000562722 HTR3AP46098 478 aa11.4□□□□□ -0.58
SF3B3-202ENST00000562722 CLK1P49759 484 aaKnown RBP11.4□□□□□ -0.58
SF3B3-202ENST00000562722 SLC16A1P53985 500 aa11.4□□□□□ -0.58
SF3B3-202ENST00000562722 FOXG1P55316 489 aaPredicted RBP11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 141.2 ms