RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 ZBTB46Q86UZ6 589 aa16.3■□□□□ 0.2
SNX1-208ENST00000559844 ATCAYQ86WG3 371 aa16.3■□□□□ 0.2
SNX1-208ENST00000559844 GID4Q8IVV7 300 aa16.3■□□□□ 0.2
SNX1-208ENST00000559844 ESX1Q8N693 406 aa16.3■□□□□ 0.2
SNX1-208ENST00000559844 AMER2Q8N7J2 671 aa16.3■□□□□ 0.2
SNX1-208ENST00000559844 NLGN4YQ8NFZ3 816 aaPredicted RBP16.3■□□□□ 0.2
SNX1-208ENST00000559844 OR14A16Q8NHC5 309 aa16.3■□□□□ 0.2
SNX1-208ENST00000559844 DNAJA4Q8WW22 397 aaPredicted RBP16.3■□□□□ 0.2
SNX1-208ENST00000559844 DAZLQ92904 295 aaKnown RBP16.3■□□□□ 0.2
SNX1-208ENST00000559844 LCORQ96JN0 433 aaPredicted RBP16.3■□□□□ 0.2
SNX1-208ENST00000559844 CCNL2Q96S94 520 aaPredicted RBP16.3■□□□□ 0.2
SNX1-208ENST00000559844 CHCHD6Q9BRQ6 235 aa16.3■□□□□ 0.2
SNX1-208ENST00000559844 OR8D2Q9GZM6 311 aa16.3■□□□□ 0.2
SNX1-208ENST00000559844 ZBTB20Q9HC78 741 aaPredicted RBP16.3■□□□□ 0.2
SNX1-208ENST00000559844 CCDC59Q9P031 241 aaKnown RBP16.3■□□□□ 0.2
SNX1-208ENST00000559844 PADI1Q9ULC6 663 aa16.3■□□□□ 0.2
SNX1-208ENST00000559844 A3GALT2U3KPV4 340 aa16.3■□□□□ 0.2
SNX1-208ENST00000559844 LOC100506127A0A0U1RQW1 187 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 TMEM129A0AVI4 362 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 A8MUA0 341 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 BHLHE40O14503 412 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 IGKV3-11P04433 115 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 HPGDP15428 266 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 PTNP21246 168 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 TBXA2RP21731 343 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 HTR1FP30939 366 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 OPRL1P41146 370 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 COPZ1P61923 177 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 SSX1Q16384 188 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 LINC00114Q6XXX2 140 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 ZNF517Q6ZMY9 492 aaPredicted RBP16.29■□□□□ 0.2
SNX1-208ENST00000559844 COX15Q7KZN9 410 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 CADM2Q8N3J6 435 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 LNX2Q8N448 690 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 SLC15A4Q8N697 577 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 ZSCAN1Q8NBB4 408 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 OR6Q1Q8NGQ2 317 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 OR4C3Q8NH37 302 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 ZNF721Q8TF20 911 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 SLIRPQ9GZT3 109 aaKnown RBP16.29■□□□□ 0.2
SNX1-208ENST00000559844 ISYNA1Q9NPH2 558 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 MEPEQ9NQ76 525 aaPredicted RBP16.29■□□□□ 0.2
SNX1-208ENST00000559844 CTSFQ9UBX1 484 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 SEC14L4Q9UDX3 406 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 SIGLEC7Q9Y286 467 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 A0A1B0GVG6 124 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 ADAM11O75078 769 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 WNT4P56705 351 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 CXXC5Q7LFL8 322 aaKnown RBP16.29■□□□□ 0.2
SNX1-208ENST00000559844 OR13C2Q8NGS9 318 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 DACH2Q96NX9 599 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 MMP27Q9H306 513 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 EXOGQ9Y2C4 368 aaKnown RBP16.29■□□□□ 0.2
SNX1-208ENST00000559844 CEP295Q9C0D2 2601 aa16.29■□□□□ 0.2
SNX1-208ENST00000559844 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.28■□□□□ 0.2
SNX1-208ENST00000559844 C9J4A7 227 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 RAD1O60671 282 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 PTP4A3O75365 173 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 DDAH2O95865 285 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 ONECUT2O95948 504 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 TGFBR1P36897 503 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 ETV1P50549 477 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 FXYD6P3P58550 94 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 NSDHLQ15738 373 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 TBC1D25Q3MII6 688 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 C16orf87Q6PH81 154 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 KIRREL2Q6UWL6 708 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 ZNF321PQ8N8H1 164 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 FAM71CQ8NEG0 241 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 MCFD2Q8NI22 146 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 EFHD2Q96C19 240 aaPredicted RBP16.28■□□□□ 0.2
SNX1-208ENST00000559844 OCEL1Q9H607 264 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 IL20RAQ9UHF4 553 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 GPN3Q9UHW5 284 aaPredicted RBP16.28■□□□□ 0.2
SNX1-208ENST00000559844 PMF1-BGLAPU3KQ54 211 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 NCOR2Q9Y618 2525 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 FREM2Q5SZK8 3169 aa16.28■□□□□ 0.2
SNX1-208ENST00000559844 HTR3EA5X5Y0 456 aa16.27■□□□□ 0.2
SNX1-208ENST00000559844 SCDO00767 359 aa16.27■□□□□ 0.2
SNX1-208ENST00000559844 PSMA1P25786 263 aaKnown RBP16.27■□□□□ 0.2
SNX1-208ENST00000559844 ZNF404Q494X3 552 aa16.27■□□□□ 0.2
SNX1-208ENST00000559844 VWA2Q5GFL6 755 aa16.27■□□□□ 0.2
SNX1-208ENST00000559844 ARMC4Q5T2S8 1044 aa16.27■□□□□ 0.2
SNX1-208ENST00000559844 HLA-DQA1Q5Y7H0 255 aa16.27■□□□□ 0.2
SNX1-208ENST00000559844 FAM198BQ6UWH4 519 aa16.27■□□□□ 0.2
SNX1-208ENST00000559844 TMCO5AQ8N6Q1 288 aa16.27■□□□□ 0.2
SNX1-208ENST00000559844 PSD4Q8NDX1 1056 aa16.27■□□□□ 0.2
SNX1-208ENST00000559844 PLPP5Q8NEB5 264 aa16.27■□□□□ 0.2
SNX1-208ENST00000559844 ADIPOR1Q96A54 375 aa16.27■□□□□ 0.2
SNX1-208ENST00000559844 CENPOQ9BU64 300 aa16.27■□□□□ 0.2
SNX1-208ENST00000559844 IFT27Q9BW83 186 aa16.27■□□□□ 0.2
SNX1-208ENST00000559844 NXF5Q9H1B4 397 aaKnown RBP16.27■□□□□ 0.2
SNX1-208ENST00000559844 AKIP1Q9NQ31 210 aa16.27■□□□□ 0.2
SNX1-208ENST00000559844 HINT3Q9NQE9 182 aaKnown RBP16.27■□□□□ 0.2
SNX1-208ENST00000559844 EXOSC3Q9NQT5 275 aaKnown RBP16.27■□□□□ 0.2
SNX1-208ENST00000559844 NDUFB11Q9NX14 153 aa16.27■□□□□ 0.2
SNX1-208ENST00000559844 COPS7AQ9UBW8 275 aa16.27■□□□□ 0.2
SNX1-208ENST00000559844 ICAM5Q9UMF0 924 aa16.27■□□□□ 0.2
SNX1-208ENST00000559844 B3GNT3Q9Y2A9 372 aa16.27■□□□□ 0.2
SNX1-208ENST00000559844 C2orf92A0A1B0GVN3 265 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms