RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 TUBA3EQ6PEY2 450 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 FAM131AQ6UXB0 335 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 CCBE1Q6UXH8 406 aaPredicted RBP9.75□□□□□ -0.85
CUX1-217ENST00000558836 QSOX2Q6ZRP7 698 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 FAM98AQ8NCA5 519 aaKnown RBP9.75□□□□□ -0.85
CUX1-217ENST00000558836 NEIL3Q8TAT5 605 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 ZPLD1Q8TCW7 415 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 TRIM2Q9C040 744 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 LANCL2Q9NS86 450 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 A0A075B6Q4 140 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 IGHV1OR21-1A0A087WYE8 117 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 IRGMA1A4Y4 181 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 RIIAD1A6NNX1 92 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 NPIPB9F8W1W9 429 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 BLOC1S5-TXNDC5H3BN57 136 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 ZNF749O43361 778 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 AKAP8O43823 692 aaKnown RBP9.75□□□□□ -0.85
CUX1-217ENST00000558836 HCN1O60741 890 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 WISP1O95388 367 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 CSF2RBP32927 897 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 NUDT1P36639 197 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 RAB15P59190 212 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 COPZ1P61923 177 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 IGLV3-21P80748 117 aaPredicted RBP9.75□□□□□ -0.85
CUX1-217ENST00000558836 E2F1Q01094 437 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 ULK3Q6PHR2 472 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 RTL4Q6ZR62 310 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 C10orf53Q8N6V4 93 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 CLDN22Q8N7P3 220 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 HLA-CQ95604 372 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 NEDD4LQ96PU5 975 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 NMNAT3Q96T66 252 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 G6PC3Q9BUM1 346 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 CMAHPQ9Y471 501 aa9.75□□□□□ -0.85
CUX1-217ENST00000558836 IGHV3-20A0A0C4DH32 117 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 J3QRE1 110 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 PSMD9O00233 223 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 KHNYNO15037 678 aaKnown RBP9.74□□□□□ -0.85
CUX1-217ENST00000558836 POU3F3P20264 500 aaPredicted RBP9.74□□□□□ -0.85
CUX1-217ENST00000558836 CTBP2P56545 445 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 ZNF141Q15928 474 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 C17orf82Q86X59 251 aaPredicted RBP9.74□□□□□ -0.85
CUX1-217ENST00000558836 C17orf47Q8NEP4 570 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 CADM4Q8NFZ8 388 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 ZNF285Q96NJ3 590 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 NUDT22Q9BRQ3 303 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 PRDM6Q9NQX0 595 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 C14orf105Q9NVL8 296 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 ATXN7L1Q9ULK2 861 aaPredicted RBP9.74□□□□□ -0.85
CUX1-217ENST00000558836 GSTK1Q9Y2Q3 226 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 MRPS17Q9Y2R5 130 aaKnown RBP9.74□□□□□ -0.85
CUX1-217ENST00000558836 MED12Q93074 2177 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 TP53BP1Q12888 1972 aaPredicted RBP9.74□□□□□ -0.85
CUX1-217ENST00000558836 A0A1B0GVC2 190 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 CCDC182A6NF36 153 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 A6NIN4 97 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 BCAT2O15382 392 aaPredicted RBP9.74□□□□□ -0.85
CUX1-217ENST00000558836 SOX30O94993 753 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 IL1AP01583 271 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 PEPDP12955 493 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 GRPRP30550 384 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 EIF2B2P49770 351 aaKnown RBP9.74□□□□□ -0.85
CUX1-217ENST00000558836 SLC37A1P57057 533 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 ERVK-25P63136 954 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 NSDHLQ15738 373 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 TCTE1Q5JU00 501 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 TMEM91Q6ZNR0 172 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 C16orf47Q6ZP98 133 aaPredicted RBP9.74□□□□□ -0.85
CUX1-217ENST00000558836 GRAMD2AQ8IUY3 354 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 GID4Q8IVV7 300 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 ARIH2OSQ8N7S6 290 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 LSMEM1Q8N8F7 131 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 OR13C5Q8NGS8 318 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 SMPDL3BQ92485 455 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 RASD2Q96D21 266 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 C4orf36Q96KX1 117 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 ZNF426Q9BUY5 554 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 ADGRL4Q9HBW9 690 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 POLE3Q9NRF9 147 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 BABAM2Q9NXR7 383 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 TBC1D24Q9ULP9 559 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 TMEM5Q9Y2B1 443 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 SLC35A3Q9Y2D2 325 aa9.74□□□□□ -0.85
CUX1-217ENST00000558836 FABP12A6NFH5 140 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 HPGDSO60760 199 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 SBK2P0C263 348 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 ZNF3P17036 446 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 HSD11B2P80365 405 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 TP53I3Q53FA7 332 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 AGAP7PQ5VUJ5 663 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 OTPQ5XKR4 325 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 IL20RBQ6UXL0 311 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 ZNF550Q7Z398 422 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 NRARPQ7Z6K4 114 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 NR2C2APQ86WQ0 139 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 C3orf49Q96BT1 292 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 TSSK2Q96PF2 358 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 DEPDC7Q96QD5 511 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 DPYSL5Q9BPU6 564 aa9.73□□□□□ -0.85
CUX1-217ENST00000558836 TMCC2O75069 709 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms