RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 OR52E6Q96RD3 313 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 ZNF300Q96RE9 604 aaPredicted RBP11.29□□□□□ -0.6
LINC00643-202ENST00000553426 CCDC106Q9BWC9 280 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 MTHFD2LQ9H903 347 aaPredicted RBP11.29□□□□□ -0.6
LINC00643-202ENST00000553426 CTPS2Q9NRF8 586 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 PNPOQ9NVS9 261 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 PRSS50Q9UI38 385 aa11.29□□□□□ -0.6
LINC00643-202ENST00000553426 ING1Q9UK53 422 aaPredicted RBP11.29□□□□□ -0.6
LINC00643-202ENST00000553426 RAI1Q7Z5J4 1906 aaPredicted RBP11.29□□□□□ -0.6
LINC00643-202ENST00000553426 IGKV3D-15A0A087WSY6 115 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 CIB4A0PJX0 185 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 CCT8L1PA6NM43 557 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 HMGN4O00479 90 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 EIF1BO60739 113 aaKnown RBP11.28□□□□□ -0.6
LINC00643-202ENST00000553426 MRPL33O75394 65 aaKnown RBP11.28□□□□□ -0.6
LINC00643-202ENST00000553426 KRT75O95678 551 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 PGRP06401 933 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 NR2F1P10589 423 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 IL7RP16871 459 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 PCSK6P29122 969 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 MAGEA8P43361 318 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 IDH2P48735 452 aaKnown RBP11.28□□□□□ -0.6
LINC00643-202ENST00000553426 MAP2K6P52564 334 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 OR2B6P58173 313 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 UFM1P61960 85 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 CHRNEQ04844 493 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 VEZF1Q14119 521 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 ZNF672Q499Z4 452 aaPredicted RBP11.28□□□□□ -0.6
LINC00643-202ENST00000553426 ATG16L1Q676U5 607 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 KLHL17Q6TDP4 642 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 LRRC74BQ6ZQY2 392 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 ANKRD42Q8N9B4 389 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 GLB1L3Q8NCI6 653 aaPredicted RBP11.28□□□□□ -0.6
LINC00643-202ENST00000553426 ZG16BQ96DA0 208 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 RADILQ96JH8 1075 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 CACYBPQ9HB71 228 aaKnown RBP11.28□□□□□ -0.6
LINC00643-202ENST00000553426 THAP1Q9NVV9 213 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 PARPBPQ9NWS1 579 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 ASB6Q9NWX5 421 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 TMEM181Q9P2C4 612 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 TRAPPC4Q9Y296 219 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 USF3Q68DE3 2245 aa11.28□□□□□ -0.6
LINC00643-202ENST00000553426 HIVEP2P31629 2446 aa11.27□□□□□ -0.6
LINC00643-202ENST00000553426 SLCO1B7G3V0H7 640 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 HDAC3O15379 428 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 PGM3O95394 542 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 DBIP07108 87 aaKnown RBP11.27□□□□□ -0.61
LINC00643-202ENST00000553426 SOD3P08294 240 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 DANCRP0C864 163 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 CCNA2P20248 432 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 COX5AP20674 150 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 IGHV1-2P23083 117 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 POLR2HP52434 150 aaKnown RBP11.27□□□□□ -0.61
LINC00643-202ENST00000553426 CDH11P55287 796 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 SLC35A1P78382 337 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 FUT5Q11128 374 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 MPP2Q14168 576 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 SYPL1Q16563 259 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 CLEC12BQ2HXU8 276 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 NXNQ6DKJ4 435 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 ABLIM2Q6H8Q1 611 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 OR7E24Q6IFN5 339 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 TMEM108Q6UXF1 575 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 DNAJC14Q6Y2X3 702 aaPredicted RBP11.27□□□□□ -0.61
LINC00643-202ENST00000553426 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.27□□□□□ -0.61
LINC00643-202ENST00000553426 HMGN2P46Q86SG4 172 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 ADGRG3Q86Y34 549 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 PEX5LQ8IYB4 626 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 DEPDC4Q8N2C3 294 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 ZNF433Q8N7K0 673 aaPredicted RBP11.27□□□□□ -0.61
LINC00643-202ENST00000553426 KBTBD8Q8NFY9 601 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 LILRB1Q8NHL6 650 aaPredicted RBP11.27□□□□□ -0.61
LINC00643-202ENST00000553426 WDR60Q8WVS4 1066 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 ZNF75CPQ92670 426 aaPredicted RBP11.27□□□□□ -0.61
LINC00643-202ENST00000553426 ARL5BQ96KC2 179 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 NAA11Q9BSU3 229 aaPredicted RBP11.27□□□□□ -0.61
LINC00643-202ENST00000553426 TRIM2Q9C040 744 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 AIG1Q9NVV5 245 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 CISD1Q9NZ45 108 aaKnown RBP11.27□□□□□ -0.61
LINC00643-202ENST00000553426 MGAT4BQ9UQ53 548 aa11.27□□□□□ -0.61
LINC00643-202ENST00000553426 FREM1Q5H8C1 2179 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 TMED7-TICAM2A0A0A6YYA0 188 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 TMEM247A6NEH6 219 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 DPRXA6NFQ7 191 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 CFAP73A6NFT4 308 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 AGAP5A6NIR3 686 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 OR5H1A6NKK0 313 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 CLDN24A6NM45 220 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 ZNF716A6NP11 495 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 OVOL3O00110 214 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 SDHDO14521 159 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 RFXANKO14593 260 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 ABCD4O14678 606 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 ZNF208O43345 1280 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 RAD51DO75771 328 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 ANP32DO95626 131 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 IGHV3-9P01782 118 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 IL6P05231 212 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 ALDOCP09972 364 aaKnown RBP11.26□□□□□ -0.61
LINC00643-202ENST00000553426 IDO1P14902 403 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms