RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ACSL1P33121 698 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 PSMB10P40306 273 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 KIR2DL1P43626 348 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-213ENST00000552720 ARF3P61204 181 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-213ENST00000552720 MGAT2Q10469 447 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 MRPL28Q13084 256 aaKnown RBP6.91□□□□□ -1.3
LIMA1-213ENST00000552720 GPM6BQ13491 265 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 GPR18Q14330 331 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 NNATQ16517 81 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 PRICKLE4Q2TBC4 344 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 DMKNQ6E0U4 476 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-213ENST00000552720 FIGLAQ6QHK4 219 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 PARM1Q6UWI2 310 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 PXKQ7Z7A4 578 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 SIAH3Q8IW03 269 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 YAF2Q8IY57 180 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 RNF113BQ8IZP6 322 aaKnown RBP6.91□□□□□ -1.3
LIMA1-213ENST00000552720 TOR1AIP2Q8NFQ8 470 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 OR52E2Q8NGJ4 325 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 OR4C6Q8NH72 309 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 PCNPQ8WW12 178 aaKnown RBP6.91□□□□□ -1.3
LIMA1-213ENST00000552720 YIPF5Q969M3 257 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 PDCD1LG2Q9BQ51 273 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 GHITMQ9H3K2 345 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 AUNIPQ9H7T9 357 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 MCCC2Q9HCC0 563 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 MRPL15Q9P015 296 aaKnown RBP6.91□□□□□ -1.3
LIMA1-213ENST00000552720 ST6GALNAC2Q9UJ37 374 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 SLC35A3Q9Y2D2 325 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 AK6Q9Y3D8 172 aaKnown RBP6.91□□□□□ -1.3
LIMA1-213ENST00000552720 ADAM18Q9Y3Q7 739 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 BRWD1Q9NSI6 2320 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 A0A1B0GWA3 101 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 RIIAD1A6NNX1 92 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 IDSB3KWA1 339 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 TNFRSF10AO00220 468 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 PRKNO60260 465 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-213ENST00000552720 IGKV1D-16P01601 117 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 MT-ND4P03905 459 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 HIST1H1CP16403 213 aaKnown RBP6.91□□□□□ -1.3
LIMA1-213ENST00000552720 HK1P19367 917 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 RAB3BP20337 219 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 TLX1P31314 330 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-213ENST00000552720 SRP54P61011 504 aaKnown RBP6.91□□□□□ -1.3
LIMA1-213ENST00000552720 CRYZQ08257 329 aaKnown RBP6.91□□□□□ -1.3
LIMA1-213ENST00000552720 DEFB110Q30KQ9 67 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 EXOSC6Q5RKV6 272 aaKnown RBP6.91□□□□□ -1.3
LIMA1-213ENST00000552720 ZNF687Q8N1G0 1237 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 CDRT4Q8N9R6 151 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 ZPLD1Q8TCW7 415 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 THAP4Q8WY91 577 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 PELI1Q96FA3 418 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 SCARF2Q96GP6 870 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-213ENST00000552720 ERMAPQ96PL5 475 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-213ENST00000552720 OR14A2Q96R54 314 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 GSDMCQ9BYG8 508 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 MED28Q9H204 178 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 CDCP1Q9H5V8 836 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 TRPV4Q9HBA0 871 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 ZFP64Q9NPA5 681 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 ZNF346Q9UL40 294 aaKnown RBP6.91□□□□□ -1.3
LIMA1-213ENST00000552720 DTX4Q9Y2E6 619 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 PCDH15Q96QU1 1955 aa6.91□□□□□ -1.3
LIMA1-213ENST00000552720 A0A0B4J2E0 115 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 TEX13CA0A0J9YWL9 993 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 A0A1B0GX12 115 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 MCIDASD6RGH6 385 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 CYR61O00622 381 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 BRINP1O60477 761 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 TCRBP04435 133 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 ATP1B1P05026 303 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 PEPDP12955 493 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 ZNF3P17036 446 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 DRD5P21918 477 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 GRPRP30550 384 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 POU6F2P78424 691 aaPredicted RBP6.9□□□□□ -1.3
LIMA1-213ENST00000552720 CLPPQ16740 277 aaPredicted RBP6.9□□□□□ -1.3
LIMA1-213ENST00000552720 CEP78Q5JTW2 689 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 FAM209AQ5JX71 171 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 STPG1Q5TH74 334 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 CDK20Q8IZL9 346 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 TOMM5Q8N4H5 51 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 ZNF655Q8N720 491 aaPredicted RBP6.9□□□□□ -1.3
LIMA1-213ENST00000552720 OR6C4Q8NGE1 309 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 OR52R1Q8NGF1 315 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 OR51Q1Q8NH59 317 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 SCMH1Q96GD3 660 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 BMFQ96LC9 184 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 DCBLD2Q96PD2 775 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 DERL3Q96Q80 235 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 MYADMQ96S97 322 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 GPR174Q9BXC1 333 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 BRD7Q9NPI1 651 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 ACTR10Q9NZ32 417 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 TEKT2Q9UIF3 430 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 MGAT4AQ9UM21 535 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 TMEM5Q9Y2B1 443 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 HEBP2Q9Y5Z4 205 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 THADAQ6YHU6 1953 aa6.9□□□□□ -1.3
LIMA1-213ENST00000552720 FAM171A2A8MVW0 826 aa6.9□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms