RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 VNN3Q9NY84 501 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 COX16Q9P0S2 106 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 ONECUT1Q9UBC0 465 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 ADAM28Q9UKQ2 775 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 HPCAL4Q9UM19 191 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 CA5BQ9Y2D0 317 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 RALGAPA1Q6GYQ0 2036 aa3□□□□□ -1.93
VPS29-205ENST00000548539 IGHV1OR15-1A0A075B7D0 117 aa3□□□□□ -1.93
VPS29-205ENST00000548539 A0A1B0GVL5 298 aa3□□□□□ -1.93
VPS29-205ENST00000548539 F5H6K3 240 aa3□□□□□ -1.93
VPS29-205ENST00000548539 ZNF264O43296 627 aa3□□□□□ -1.93
VPS29-205ENST00000548539 PFKFB2O60825 505 aa3□□□□□ -1.93
VPS29-205ENST00000548539 B4GALT2O60909 372 aa3□□□□□ -1.93
VPS29-205ENST00000548539 SERF1AO75920 110 aa3□□□□□ -1.93
VPS29-205ENST00000548539 AP2A1O95782 977 aa3□□□□□ -1.93
VPS29-205ENST00000548539 IGHV3-23P01764 117 aa3□□□□□ -1.93
VPS29-205ENST00000548539 HSPB1P04792 205 aaKnown RBP3□□□□□ -1.93
VPS29-205ENST00000548539 RNH1P13489 461 aaKnown RBP3□□□□□ -1.93
VPS29-205ENST00000548539 ZBTB25P24278 435 aa3□□□□□ -1.93
VPS29-205ENST00000548539 PBLDP30039 288 aaPredicted RBP3□□□□□ -1.93
VPS29-205ENST00000548539 RPL13AP40429 203 aaKnown RBP3□□□□□ -1.93
VPS29-205ENST00000548539 CCT3P49368 545 aaKnown RBP3□□□□□ -1.93
VPS29-205ENST00000548539 EFNB2P52799 333 aa3□□□□□ -1.93
VPS29-205ENST00000548539 ATP1B3P54709 279 aa3□□□□□ -1.93
VPS29-205ENST00000548539 RPS14P62263 151 aaKnown RBP3□□□□□ -1.93
VPS29-205ENST00000548539 KLRC3Q07444 240 aa3□□□□□ -1.93
VPS29-205ENST00000548539 NCBP1Q09161 790 aaKnown RBP3□□□□□ -1.93
VPS29-205ENST00000548539 SLC15A2Q16348 729 aa3□□□□□ -1.93
VPS29-205ENST00000548539 LRRC36Q1X8D7 754 aa3□□□□□ -1.93
VPS29-205ENST00000548539 METTL11BQ5VVY1 283 aa3□□□□□ -1.93
VPS29-205ENST00000548539 OLFML2AQ68BL7 652 aa3□□□□□ -1.93
VPS29-205ENST00000548539 ARCQ7LC44 396 aa3□□□□□ -1.93
VPS29-205ENST00000548539 HSD17B13Q7Z5P4 300 aaPredicted RBP3□□□□□ -1.93
VPS29-205ENST00000548539 DHDDSQ86SQ9 333 aa3□□□□□ -1.93
VPS29-205ENST00000548539 C17orf82Q86X59 251 aaPredicted RBP3□□□□□ -1.93
VPS29-205ENST00000548539 CEND1Q8N111 149 aa3□□□□□ -1.93
VPS29-205ENST00000548539 SCFD1Q8WVM8 642 aa3□□□□□ -1.93
VPS29-205ENST00000548539 MRPS31Q92665 395 aaKnown RBP3□□□□□ -1.93
VPS29-205ENST00000548539 N4BP2L2Q92802 583 aaPredicted RBP3□□□□□ -1.93
VPS29-205ENST00000548539 FGF11Q92914 225 aa3□□□□□ -1.93
VPS29-205ENST00000548539 PGLYRP4Q96LB8 373 aa3□□□□□ -1.93
VPS29-205ENST00000548539 TCEANC2Q96MN5 208 aa3□□□□□ -1.93
VPS29-205ENST00000548539 SRXN1Q9BYN0 137 aa3□□□□□ -1.93
VPS29-205ENST00000548539 SMYD3Q9H7B4 428 aa3□□□□□ -1.93
VPS29-205ENST00000548539 ZNF702PQ9H963 129 aa3□□□□□ -1.93
VPS29-205ENST00000548539 HOXC10Q9NYD6 342 aa3□□□□□ -1.93
VPS29-205ENST00000548539 PRPF19Q9UMS4 504 aaKnown RBP3□□□□□ -1.93
VPS29-205ENST00000548539 RRP15Q9Y3B9 282 aaKnown RBP3□□□□□ -1.93
VPS29-205ENST00000548539 TTC21BQ7Z4L5 1316 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 BTBD17A6NE02 478 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 ZFP92A6NM28 416 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 FOXE1O00358 373 aaPredicted RBP2.99□□□□□ -1.93
VPS29-205ENST00000548539 NBR2O15453 112 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 MED7O43513 233 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 TIMM8AO60220 97 aaPredicted RBP2.99□□□□□ -1.93
VPS29-205ENST00000548539 LYPLA1O75608 230 aaPredicted RBP2.99□□□□□ -1.93
VPS29-205ENST00000548539 LALBAP00709 142 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 SERPINA3P01011 423 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 LGALS2P05162 132 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 CAPN1P07384 714 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 PSMB1P20618 241 aaKnown RBP2.99□□□□□ -1.93
VPS29-205ENST00000548539 ATP6V1B2P21281 511 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 GNA11P29992 359 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 MAP3K8P41279 467 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 CEBPDP49716 269 aaPredicted RBP2.99□□□□□ -1.93
VPS29-205ENST00000548539 SLC26A2P50443 739 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 SEC61GP60059 68 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 CHRNB3Q05901 458 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 CCDC173Q0VFZ6 552 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 KLRB1Q12918 225 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 DDX39BQ13838 428 aaKnown RBP2.99□□□□□ -1.93
VPS29-205ENST00000548539 BOLA3Q53S33 107 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 SFT2D3Q587I9 215 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 C9orf129Q5T035 196 aaKnown RBP2.99□□□□□ -1.93
VPS29-205ENST00000548539 GPRC6AQ5T6X5 926 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 ZNF544Q6NX49 715 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 TFAP2EQ6VUC0 442 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 ACOT7LQ6ZUV0 252 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 LRRC75A-AS1Q8N1F1 130 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 SVOPLQ8N434 492 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 FBXL16Q8N461 479 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 C11orf42Q8N5U0 333 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 OR1L4Q8NGR5 311 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 OR13C2Q8NGS9 318 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 MARC2Q969Z3 335 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 EFHD2Q96C19 240 aaPredicted RBP2.99□□□□□ -1.93
VPS29-205ENST00000548539 C10orf35Q96D05 121 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 MTMR9Q96QG7 549 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 RNF2Q99496 336 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 COPS8Q99627 209 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 SLITRK2Q9H156 845 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 ISG20L2Q9H9L3 353 aaKnown RBP2.99□□□□□ -1.93
VPS29-205ENST00000548539 FN3KRPQ9HA64 309 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 MCCC2Q9HCC0 563 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 NUDT15Q9NV35 164 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 HYPKQ9NX55 129 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 STAP1Q9ULZ2 295 aa2.99□□□□□ -1.93
VPS29-205ENST00000548539 RPAP1Q9BWH6 1393 aaPredicted RBP2.99□□□□□ -1.93
VPS29-205ENST00000548539 IGHV7-81A0A0B4J1V7 117 aa2.98□□□□□ -1.93
VPS29-205ENST00000548539 ARHGEF35A5YM69 484 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms