RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 AIG1Q9NVV5 245 aa11.62□□□□□ -0.55
RTN3-213ENST00000543552 ING1Q9UK53 422 aaPredicted RBP11.62□□□□□ -0.55
RTN3-213ENST00000543552 PRDM4Q9UKN5 801 aa11.62□□□□□ -0.55
RTN3-213ENST00000543552 NOSIPQ9Y314 301 aaKnown RBP11.62□□□□□ -0.55
RTN3-213ENST00000543552 CCDC154A6NI56 674 aa11.61□□□□□ -0.55
RTN3-213ENST00000543552 OR5H1A6NKK0 313 aa11.61□□□□□ -0.55
RTN3-213ENST00000543552 SLCO1B7G3V0H7 640 aa11.61□□□□□ -0.55
RTN3-213ENST00000543552 HMGN4O00479 90 aa11.61□□□□□ -0.55
RTN3-213ENST00000543552 EIF1BO60739 113 aaKnown RBP11.61□□□□□ -0.55
RTN3-213ENST00000543552 KRT75O95678 551 aa11.61□□□□□ -0.55
RTN3-213ENST00000543552 PGRP06401 933 aa11.61□□□□□ -0.55
RTN3-213ENST00000543552 BST1Q10588 318 aa11.61□□□□□ -0.55
RTN3-213ENST00000543552 FBXW9Q5XUX1 488 aa11.61□□□□□ -0.55
RTN3-213ENST00000543552 KLHL17Q6TDP4 642 aa11.61□□□□□ -0.55
RTN3-213ENST00000543552 DNAJC14Q6Y2X3 702 aaPredicted RBP11.61□□□□□ -0.55
RTN3-213ENST00000543552 RNF130Q86XS8 419 aa11.61□□□□□ -0.55
RTN3-213ENST00000543552 ZNF524Q96C55 264 aa11.61□□□□□ -0.55
RTN3-213ENST00000543552 OR52E6Q96RD3 313 aa11.61□□□□□ -0.55
RTN3-213ENST00000543552 MTHFD2LQ9H903 347 aaPredicted RBP11.61□□□□□ -0.55
RTN3-213ENST00000543552 CACYBPQ9HB71 228 aaKnown RBP11.61□□□□□ -0.55
RTN3-213ENST00000543552 BARX1Q9HBU1 254 aaPredicted RBP11.61□□□□□ -0.55
RTN3-213ENST00000543552 THAP1Q9NVV9 213 aa11.61□□□□□ -0.55
RTN3-213ENST00000543552 TMEM181Q9P2C4 612 aa11.61□□□□□ -0.55
RTN3-213ENST00000543552 PRSS50Q9UI38 385 aa11.61□□□□□ -0.55
RTN3-213ENST00000543552 MGAT4BQ9UQ53 548 aa11.61□□□□□ -0.55
RTN3-213ENST00000543552 TRAPPC4Q9Y296 219 aa11.61□□□□□ -0.55
RTN3-213ENST00000543552 USF3Q68DE3 2245 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 CIB4A0PJX0 185 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 AGAP5A6NIR3 686 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 C9JVG2 144 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 OVOL3O00110 214 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 FAAHO00519 579 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 HDAC3O15379 428 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 MRPL33O75394 65 aaKnown RBP11.6□□□□□ -0.55
RTN3-213ENST00000543552 DBIP07108 87 aaKnown RBP11.6□□□□□ -0.55
RTN3-213ENST00000543552 NR2F1P10589 423 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 IDO1P14902 403 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 IL7RP16871 459 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 IDUAP35475 653 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 IDH2P48735 452 aaKnown RBP11.6□□□□□ -0.55
RTN3-213ENST00000543552 POLR2HP52434 150 aaKnown RBP11.6□□□□□ -0.55
RTN3-213ENST00000543552 SLC16A1P53985 500 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 CDH11P55287 796 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 PHC1P78364 1004 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 SLC35A1P78382 337 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 CHRNEQ04844 493 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 FUT5Q11128 374 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 VEZF1Q14119 521 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 CLEC12BQ2HXU8 276 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 TNFAIP8L3Q5GJ75 292 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 ATG16L1Q676U5 607 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 OR7E24Q6IFN5 339 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 TMEM108Q6UXF1 575 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 LRRC74BQ6ZQY2 392 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 ZNF621Q6ZSS3 439 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 OLIG3Q7RTU3 272 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 PEX5LQ8IYB4 626 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 ZNF440Q8IYI8 595 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 ANKRD42Q8N9B4 389 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 WDR60Q8WVS4 1066 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 ZNF75CPQ92670 426 aaPredicted RBP11.6□□□□□ -0.55
RTN3-213ENST00000543552 ZNF775Q96BV0 537 aaPredicted RBP11.6□□□□□ -0.55
RTN3-213ENST00000543552 HS6ST2Q96MM7 605 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 NAA11Q9BSU3 229 aaPredicted RBP11.6□□□□□ -0.55
RTN3-213ENST00000543552 TRIM2Q9C040 744 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 PNPOQ9NVS9 261 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 PARPBPQ9NWS1 579 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 ASB6Q9NWX5 421 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 TAS2R16Q9NYV7 291 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 CALML5Q9NZT1 146 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 RAB21Q9UL25 225 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 SLC9A8Q9Y2E8 581 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 JMJD1CQ15652 2540 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 FN1P02751 2386 aaKnown RBP11.6□□□□□ -0.55
RTN3-213ENST00000543552 FREM1Q5H8C1 2179 aa11.6□□□□□ -0.55
RTN3-213ENST00000543552 TMED7-TICAM2A0A0A6YYA0 188 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 TMEM247A6NEH6 219 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 CFAP73A6NFT4 308 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 CCT8L1PA6NM43 557 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 ZNF716A6NP11 495 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 SDHDO14521 159 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 RFXANKO14593 260 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 ZNF208O43345 1280 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 PGM3O95394 542 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 IL6P05231 212 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 ALDOCP09972 364 aaKnown RBP11.59□□□□□ -0.55
RTN3-213ENST00000543552 DANCRP0C864 163 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 IGHV1-2P23083 117 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 SLC1A3P43003 542 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 NME5P56597 212 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 OR2B6P58173 313 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 UFM1P61960 85 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 ZSWIM7Q19AV6 140 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 C1QTNF12Q5T7M4 302 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 SEZ6L2Q6UXD5 910 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 DEPDC4Q8N2C3 294 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 ZNF433Q8N7K0 673 aaPredicted RBP11.59□□□□□ -0.55
RTN3-213ENST00000543552 KBTBD8Q8NFY9 601 aa11.59□□□□□ -0.55
RTN3-213ENST00000543552 LILRB1Q8NHL6 650 aaPredicted RBP11.59□□□□□ -0.55
RTN3-213ENST00000543552 CNOT9Q92600 299 aaKnown RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms