RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 MED28Q9H204 178 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 CLEC4AQ9UMR7 237 aa17.76■□□□□ 0.43
VPS28-213ENST00000530983 A0A0B4J203 849 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.75■□□□□ 0.43
VPS28-213ENST00000530983 A0A1B0GWA3 101 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 H0YGG7 62 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 MAGEB4O15481 346 aaPredicted RBP17.75■□□□□ 0.43
VPS28-213ENST00000530983 TSC22D2O75157 780 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 GPR75O95800 540 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 DHFRP00374 187 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 ATF1P18846 271 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 GDI1P31150 447 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 ARF3P61204 181 aaPredicted RBP17.75■□□□□ 0.43
VPS28-213ENST00000530983 TP53I3Q53FA7 332 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 TMEM196Q5HYL7 178 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 ANKRD54Q6NXT1 300 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 ARL14Q8N4G2 192 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 OR11H7Q8NGC8 314 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 PHF21AQ96BD5 680 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 ACTR10Q9NZ32 417 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 BAIAP2Q9UQB8 552 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 RANBP2P49792 3224 aaKnown RBP17.75■□□□□ 0.43
VPS28-213ENST00000530983 A0A1W2PPK0 400 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 A6NCN8 305 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 CDK2AP1O14519 115 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 AK1P00568 194 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 TFP02787 698 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 CD3GP09693 182 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 RTL4Q6ZR62 310 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 LSMEM1Q8N8F7 131 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 OR8H1Q8NGG4 311 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 HAVCR2Q8TDQ0 301 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 ZFYVE21Q9BQ24 234 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 MTIF3Q9H2K0 278 aaKnown RBP17.75■□□□□ 0.43
VPS28-213ENST00000530983 DPAGT1Q9H3H5 408 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 SLCO1C1Q9NYB5 712 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 FBXL21Q9UKT6 434 aa17.75■□□□□ 0.43
VPS28-213ENST00000530983 A0A0C4DFX4 3053 aa17.74■□□□□ 0.43
VPS28-213ENST00000530983 TRAV1-2A0A0B4J238 106 aa17.74■□□□□ 0.43
VPS28-213ENST00000530983 OR6C74A6NCV1 312 aa17.74■□□□□ 0.43
VPS28-213ENST00000530983 SCO1O75880 301 aa17.74■□□□□ 0.43
VPS28-213ENST00000530983 TCRBP04435 133 aa17.74■□□□□ 0.43
VPS28-213ENST00000530983 SNRPBP14678 240 aaKnown RBP17.74■□□□□ 0.43
VPS28-213ENST00000530983 DGCR2P98153 550 aa17.74■□□□□ 0.43
VPS28-213ENST00000530983 POU4F2Q12837 409 aa17.74■□□□□ 0.43
VPS28-213ENST00000530983 GPR18Q14330 331 aa17.74■□□□□ 0.43
VPS28-213ENST00000530983 NFATC4Q14934 902 aa17.74■□□□□ 0.43
VPS28-213ENST00000530983 ITPRIPL2Q3MIP1 535 aa17.74■□□□□ 0.43
VPS28-213ENST00000530983 ZBTB37Q5TC79 503 aa17.74■□□□□ 0.43
VPS28-213ENST00000530983 ZNF614Q8N883 585 aa17.74■□□□□ 0.43
VPS28-213ENST00000530983 FAM3CQ92520 227 aa17.74■□□□□ 0.43
VPS28-213ENST00000530983 CTHRC1Q96CG8 243 aa17.74■□□□□ 0.43
VPS28-213ENST00000530983 SMAD5Q99717 465 aaKnown RBP17.74■□□□□ 0.43
VPS28-213ENST00000530983 EVA1BQ9NVM1 165 aa17.74■□□□□ 0.43
VPS28-213ENST00000530983 EIF3KQ9UBQ5 218 aaKnown RBP17.74■□□□□ 0.43
VPS28-213ENST00000530983 UBL3O95164 117 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 EPXP11678 715 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 PVRP15151 417 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 CAPZA2P47755 286 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 EMDP50402 254 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 RNASE12Q5GAN4 147 aaKnown RBP17.73■□□□□ 0.43
VPS28-213ENST00000530983 ARHGAP11AQ6P4F7 1023 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 ZC3H14Q6PJT7 736 aaKnown RBP17.73■□□□□ 0.43
VPS28-213ENST00000530983 TOMM5Q8N4H5 51 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 LRRC17Q8N6Y2 441 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 THAP4Q8WY91 577 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 PMM1Q92871 262 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 ZMYND19Q96E35 227 aaPredicted RBP17.73■□□□□ 0.43
VPS28-213ENST00000530983 OMA1Q96E52 524 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 PELI1Q96FA3 418 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 CAPN10Q9HC96 672 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 ZFP64Q9NPA5 681 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 GLTPQ9NZD2 209 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 NUBP2Q9Y5Y2 271 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 OGG1O15527 345 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 CA3P07451 260 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 HOXC4P09017 264 aaPredicted RBP17.73■□□□□ 0.43
VPS28-213ENST00000530983 STOMP27105 288 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 SLC6A6P31641 620 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 ACAA2P42765 397 aaKnown RBP17.73■□□□□ 0.43
VPS28-213ENST00000530983 LSSP48449 732 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 MMP15P51511 669 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 IKZF1Q13422 519 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 DGAT2L6Q6ZPD8 337 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 SIAH3Q8IW03 269 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 IQCF2Q8IXL9 164 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 SDR9C7Q8NEX9 313 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 RERGQ96A58 199 aaPredicted RBP17.73■□□□□ 0.43
VPS28-213ENST00000530983 SMIM19Q96E16 107 aa17.73■□□□□ 0.43
VPS28-213ENST00000530983 GRXCR1A8MXD5 290 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 NKX2-2O95096 273 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 CBX7O95931 251 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 COL9A1P20849 921 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 GIFP27352 417 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 CDK5R1Q15078 307 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 ESPNLQ6ZVH7 1005 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 OR52E2Q8NGJ4 325 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 CCDC120Q96HB5 630 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 WDR92Q96MX6 357 aa17.72■□□□□ 0.43
VPS28-213ENST00000530983 ZFP3Q96NJ6 502 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms