RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 RAP2AP10114 183 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 TFPIP10646 304 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 GCKP35557 465 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 APOBEC1P41238 236 aaKnown RBP12.37□□□□□ -0.43
CD44-224ENST00000526669 HTR3AP46098 478 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 LHX2P50458 406 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 CLDN20P56880 219 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 ACTR3P61158 418 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 CRYZQ08257 329 aaKnown RBP12.37□□□□□ -0.43
CD44-224ENST00000526669 PPP1R8Q12972 351 aaKnown RBP12.37□□□□□ -0.43
CD44-224ENST00000526669 SELENBP1Q13228 472 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 AAGABQ6PD74 315 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 ZNF613Q6PF04 617 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 GFRALQ6UXV0 394 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 OFCC1Q8IZS5 231 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 ZNF843Q8N446 348 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 OR5M9Q8NGP3 310 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 OR52J3Q8NH60 311 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 DNAJA4Q8WW22 397 aaPredicted RBP12.37□□□□□ -0.43
CD44-224ENST00000526669 FNDC11Q9BVV2 318 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 CHID1Q9BWS9 393 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 IL1RAPQ9NPH3 570 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 PLSCR2Q9NRY7 297 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 CHRNA9Q9UGM1 479 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 ALPK2Q86TB3 2170 aa12.37□□□□□ -0.43
CD44-224ENST00000526669 A0A1B0GVC2 190 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 KPNA4O00629 521 aaPredicted RBP12.36□□□□□ -0.43
CD44-224ENST00000526669 AQP7O14520 342 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 EIF1AYO14602 144 aaKnown RBP12.36□□□□□ -0.43
CD44-224ENST00000526669 CHP2O43745 196 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 ENTPD5O75356 428 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 ITGA2P17301 1181 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 RHCEP18577 417 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 CHMP24386 653 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 ELK4P28324 431 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 ADH6P28332 368 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 RRM2P31350 389 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 MAGEA2P43356 314 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 DLX5P56178 289 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 C19orf57Q0VDD7 668 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 TMEM176BQ3YBM2 270 aaPredicted RBP12.36□□□□□ -0.43
CD44-224ENST00000526669 KRTCAP3Q53RY4 240 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 FGD3Q5JSP0 725 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 VASNQ6EMK4 673 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 C3orf33Q6P1S2 294 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 ULK3Q6PHR2 472 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 ZNF605Q86T29 641 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 CHERPQ8IWX8 916 aaKnown RBP12.36□□□□□ -0.43
CD44-224ENST00000526669 LILRA2Q8N149 483 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 TMEM255BQ8WV15 326 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 SLC38A4Q969I6 547 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 BARD1Q99728 777 aaKnown RBP12.36□□□□□ -0.43
CD44-224ENST00000526669 PRSS27Q9BQR3 290 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 SERINC1Q9NRX5 453 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 MAN2C1Q9NTJ4 1040 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 CCM2LQ9NUG4 571 aaPredicted RBP12.36□□□□□ -0.43
CD44-224ENST00000526669 VNN3Q9NY84 501 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 ACAD8Q9UKU7 415 aa12.36□□□□□ -0.43
CD44-224ENST00000526669 IGKV1D-42A0A075B6H8 117 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 A0A0J9YW62 118 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 TNFSF11O14788 317 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 PIP5K1CO60331 668 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 TPOP07202 933 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 H1F0P07305 194 aaKnown RBP12.35□□□□□ -0.43
CD44-224ENST00000526669 EDN3P14138 238 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 ABOP16442 354 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 SLC7A1P30825 629 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 IFNA8P32881 189 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 SUCLG1P53597 346 aaKnown RBP12.35□□□□□ -0.43
CD44-224ENST00000526669 UGT2B15P54855 530 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 CLDN18P56856 261 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 RAC1P63000 192 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 TLE1Q04724 770 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 ST3GAL3Q11203 375 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.35□□□□□ -0.43
CD44-224ENST00000526669 SYT14P1Q58G82 188 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 C1QL3Q5VWW1 255 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 PPP4R4Q6NUP7 873 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 ARHGAP11AQ6P4F7 1023 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 PLXDC2Q6UX71 529 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 PIWIL3Q7Z3Z3 882 aaKnown RBP12.35□□□□□ -0.43
CD44-224ENST00000526669 CD163Q86VB7 1156 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 MEX3DQ86XN8 651 aaKnown RBP12.35□□□□□ -0.43
CD44-224ENST00000526669 PIK3C3Q8NEB9 887 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 PFN4Q8NHR9 129 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 SARAFQ96BY9 339 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 WDYHV1Q96HA8 205 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 ARL5BQ96KC2 179 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 KLHL15Q96M94 604 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 OR5B2Q96R09 309 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 TIMP4Q99727 224 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 PIP5K1AQ99755 562 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 POLR2J2Q9GZM3 115 aaKnown RBP12.35□□□□□ -0.43
CD44-224ENST00000526669 POLR2J3Q9H1A7 115 aaKnown RBP12.35□□□□□ -0.43
CD44-224ENST00000526669 ALKBH4Q9NXW9 302 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 SPIN1Q9Y657 262 aaPredicted RBP12.35□□□□□ -0.43
CD44-224ENST00000526669 AP4B1Q9Y6B7 739 aa12.35□□□□□ -0.43
CD44-224ENST00000526669 A0A087WUJ7 227 aa12.34□□□□□ -0.43
CD44-224ENST00000526669 B8ZZF3 427 aa12.34□□□□□ -0.43
CD44-224ENST00000526669 H0Y3Z8 333 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms