RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 PHYHIPLQ96FC7 376 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 COQ2Q96H96 371 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 PGLYRP4Q96LB8 373 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 CCNL2Q96S94 520 aaPredicted RBP2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 GAL3ST1Q99999 423 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 MAGT1Q9H0U3 335 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 POPDC2Q9HBU9 364 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 SMOXQ9NWM0 555 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 PRPF19Q9UMS4 504 aaKnown RBP2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 POLDIP2Q9Y2S7 368 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 TIMM10BQ9Y5J6 103 aa2.89□□□□□ -1.95
HMGB1P28-201ENST00000507778 POLR2DO15514 142 aaKnown RBP2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 ZNF208O43345 1280 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 PFKFB2O60825 505 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 AP2A1O95782 977 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 TIMP1P01033 207 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 IGHV3-48P01763 117 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 IGHG4P01861 327 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 DBTP11182 482 aaKnown RBP2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 CD1EP15812 388 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 COX5AP20674 150 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 GABRR1P24046 479 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 RPL13AP40429 203 aaKnown RBP2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 MAP3K8P41279 467 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 NOVP48745 357 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 CASP4P49662 377 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 UBE2HP62256 183 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 RIPK1Q13546 671 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 ZNF79Q15937 498 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 CENPPQ6IPU0 288 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 ZSCAN25Q6NSZ9 544 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 FAM43BQ6ZT52 329 aaPredicted RBP2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 FAM220AQ7Z4H9 259 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 VRK2Q86Y07 508 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 CCDC65Q8IXS2 484 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 ZCCHC7Q8N3Z6 543 aaKnown RBP2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 CATSPER1Q8NEC5 780 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 OR2L5Q8NG80 312 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 LINC01006Q8NI28 216 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 OR1E3Q8WZA6 343 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 ST8SIA1Q92185 356 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 TECTBQ96PL2 329 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 PSKH2Q96QS6 385 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 TBX15Q96SF7 602 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 KLHDC3Q9BQ90 382 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 EBF4Q9BQW3 602 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 TMEM43Q9BTV4 400 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 RAB34Q9BZG1 259 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 LRRC40Q9H9A6 602 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 PLSCR3Q9NRY6 295 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 CLEC4AQ9UMR7 237 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 COPS3Q9UNS2 423 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 IFT52Q9Y366 437 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 HCFC1P51610 2035 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 RALGAPA1Q6GYQ0 2036 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 TTC21BQ7Z4L5 1316 aa2.88□□□□□ -1.95
HMGB1P28-201ENST00000507778 RPAP1Q9BWH6 1393 aaPredicted RBP2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 HELTA6NFD8 242 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 PCP4L1A6NKN8 68 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 IDSB3KWA1 339 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 RIPK2O43353 540 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 BBOX1O75936 387 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 ZNF19P17023 458 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 PCMT1P22061 227 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 HMGB2P26583 209 aaKnown RBP2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 GNA11P29992 359 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 CALCRP30988 508 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 EFNB2P52799 333 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 AIF1P55008 147 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 BIDP55957 195 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 SFT2D3Q587I9 215 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 OR4F3Q6IEY1 312 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 KDELC1Q6UW63 502 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 ZNF679Q8IYX0 411 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 OR2L13Q8N349 312 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 EIF1ADQ8N9N8 165 aaKnown RBP2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 OR52I1Q8NGK6 324 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 SLC41A3Q96GZ6 507 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 SEC22AQ96IW7 307 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 RPRD1AQ96P16 312 aaPredicted RBP2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 NPAS2Q99743 824 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 ARHGDIGQ99819 225 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 CAPS2Q9BXY5 557 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 VCPKMTQ9H867 229 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 ZDHHC11Q9H8X9 412 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 SH2D2AQ9NP31 389 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 BTNL2Q9UIR0 455 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 CDH9Q9ULB4 789 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 UGT2A1Q9Y4X1 527 aa2.87□□□□□ -1.95
HMGB1P28-201ENST00000507778 A0A0G2JRQ6 117 aa2.86□□□□□ -1.95
HMGB1P28-201ENST00000507778 A8MU10 97 aa2.86□□□□□ -1.95
HMGB1P28-201ENST00000507778 HIP1O00291 1037 aa2.86□□□□□ -1.95
HMGB1P28-201ENST00000507778 RGS16O15492 202 aaPredicted RBP2.86□□□□□ -1.95
HMGB1P28-201ENST00000507778 SURF6O75683 361 aaKnown RBP2.86□□□□□ -1.95
HMGB1P28-201ENST00000507778 MMP23AO75900 390 aa2.86□□□□□ -1.95
HMGB1P28-201ENST00000507778 DIRAS1O95057 198 aa2.86□□□□□ -1.95
HMGB1P28-201ENST00000507778 SNAPINO95295 136 aa2.86□□□□□ -1.95
HMGB1P28-201ENST00000507778 CAPN1P07384 714 aa2.86□□□□□ -1.95
HMGB1P28-201ENST00000507778 POU2F1P14859 743 aa2.86□□□□□ -1.95
HMGB1P28-201ENST00000507778 RFC4P35249 363 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms