RNA–Protein interactions for RNA: ENST00000498438.1

HOXD11-202, Transcript of homeobox D11, humanhuman

TSL 1 (best)

Gene HOXD11, Length 1,259 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11-202ENST00000498438 DNAJA3Q96EY1 480 aa16.37■□□□□ 0.21
HOXD11-202ENST00000498438 ARL5BQ96KC2 179 aa16.37■□□□□ 0.21
HOXD11-202ENST00000498438 BCO1Q9HAY6 547 aa16.37■□□□□ 0.21
HOXD11-202ENST00000498438 NPHS2Q9NP85 383 aa16.37■□□□□ 0.21
HOXD11-202ENST00000498438 A4GALTQ9NPC4 353 aa16.37■□□□□ 0.21
HOXD11-202ENST00000498438 FANCFQ9NPI8 374 aa16.37■□□□□ 0.21
HOXD11-202ENST00000498438 TMEM45AQ9NWC5 275 aa16.37■□□□□ 0.21
HOXD11-202ENST00000498438 DCTN4Q9UJW0 460 aa16.37■□□□□ 0.21
HOXD11-202ENST00000498438 ING1Q9UK53 422 aaPredicted RBP16.37■□□□□ 0.21
HOXD11-202ENST00000498438 PRR14LQ5THK1 2151 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 TMED7-TICAM2A0A0A6YYA0 188 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 A0A0G2JPF8 293 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 HNRNPCL2B2RXH8 293 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 HNRNPCL3B7ZW38 293 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 FAAHO00519 579 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 CYTIPO60759 359 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 HNRNPCL1O60812 293 aaKnown RBP16.36■□□□□ 0.21
HOXD11-202ENST00000498438 GKN3PP0CG01 181 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 HNRNPCL4P0DMR1 293 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 BMP2P12643 396 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 UQCRBP14927 111 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 NCF2P19878 526 aaPredicted RBP16.36■□□□□ 0.21
HOXD11-202ENST00000498438 CCNA2P20248 432 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 DNASE1P24855 282 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 SLC1A3P43003 542 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 POLR2HP52434 150 aaKnown RBP16.36■□□□□ 0.21
HOXD11-202ENST00000498438 IRX1P78414 480 aaPredicted RBP16.36■□□□□ 0.21
HOXD11-202ENST00000498438 RASGEF1BQ0VAM2 473 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 RNF220Q5VTB9 566 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 ABLIM2Q6H8Q1 611 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 SPNS3Q6ZMD2 512 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 ZNF440Q8IYI8 595 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 TACO1Q9BSH4 297 aaKnown RBP16.36■□□□□ 0.21
HOXD11-202ENST00000498438 OSGIN1Q9UJX0 560 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 EDARQ9UNE0 448 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 TMED7Q9Y3B3 224 aa16.36■□□□□ 0.21
HOXD11-202ENST00000498438 TMEM72A0PK05 275 aa16.35■□□□□ 0.21
HOXD11-202ENST00000498438 PMS2P2O95744 297 aa16.35■□□□□ 0.21
HOXD11-202ENST00000498438 THBS1P07996 1170 aa16.35■□□□□ 0.21
HOXD11-202ENST00000498438 TACR3P29371 465 aa16.35■□□□□ 0.21
HOXD11-202ENST00000498438 LARS2Q15031 903 aaKnown RBP16.35■□□□□ 0.21
HOXD11-202ENST00000498438 PIK3IP1Q96FE7 263 aa16.35■□□□□ 0.21
HOXD11-202ENST00000498438 ZNF300Q96RE9 604 aaPredicted RBP16.35■□□□□ 0.21
HOXD11-202ENST00000498438 CACYBPQ9HB71 228 aaKnown RBP16.35■□□□□ 0.21
HOXD11-202ENST00000498438 VAPAQ9P0L0 249 aa16.35■□□□□ 0.21
HOXD11-202ENST00000498438 HDGFL3Q9Y3E1 203 aa16.35■□□□□ 0.21
HOXD11-202ENST00000498438 PRRC2AP48634 2157 aaKnown RBP16.35■□□□□ 0.21
HOXD11-202ENST00000498438 ITPR3Q14573 2671 aa16.35■□□□□ 0.21
HOXD11-202ENST00000498438 MED13LQ71F56 2210 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 TRBV5-3A0A0A0MS03 114 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 A0A0G2JND7 137 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 GCM2O75603 506 aaPredicted RBP16.34■□□□□ 0.21
HOXD11-202ENST00000498438 ATE1O95260 518 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 RAF1P04049 648 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 THBDP07204 575 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 PPP3CBP16298 524 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 PSMB1P20618 241 aaKnown RBP16.34■□□□□ 0.21
HOXD11-202ENST00000498438 FKBP2P26885 142 aaKnown RBP16.34■□□□□ 0.21
HOXD11-202ENST00000498438 CLK1P49759 484 aaKnown RBP16.34■□□□□ 0.21
HOXD11-202ENST00000498438 GCNT6Q5T4J0 391 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 PRAMEF8Q5VWM4 474 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 PRAMEF7Q5VXH5 474 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 MTDHQ86UE4 582 aaKnown RBP16.34■□□□□ 0.21
HOXD11-202ENST00000498438 CXorf67Q86X51 503 aaPredicted RBP16.34■□□□□ 0.21
HOXD11-202ENST00000498438 GABRG1Q8N1C3 465 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 C10orf111Q8N326 155 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 CLIP4Q8N3C7 705 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 BBS10Q8TAM1 723 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 ZNF775Q96BV0 537 aaPredicted RBP16.34■□□□□ 0.21
HOXD11-202ENST00000498438 DDIT4LQ96D03 193 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 ZHX1-C8orf76Q96EF9 292 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 FOXC2Q99958 501 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 SIKE1Q9BRV8 207 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 SPATA9Q9BWV2 254 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 ACTR6Q9GZN1 396 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 RABEP2Q9H5N1 569 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 ZNF385DQ9H6B1 395 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 BCL2L10Q9HD36 194 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 ZNF446Q9NWS9 450 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 CHST2Q9Y4C5 530 aa16.34■□□□□ 0.21
HOXD11-202ENST00000498438 MAP1AP78559 2803 aaPredicted RBP16.33■□□□□ 0.21
HOXD11-202ENST00000498438 ROS1P08922 2347 aa16.33■□□□□ 0.2
HOXD11-202ENST00000498438 A0A1W2PP18 115 aa16.33■□□□□ 0.2
HOXD11-202ENST00000498438 ZNF724A8MTY0 619 aa16.33■□□□□ 0.2
HOXD11-202ENST00000498438 C5orf58C9J3I9 102 aa16.33■□□□□ 0.2
HOXD11-202ENST00000498438 ZNF208O43345 1280 aa16.33■□□□□ 0.2
HOXD11-202ENST00000498438 ARAFP10398 606 aa16.33■□□□□ 0.2
HOXD11-202ENST00000498438 PPIBP23284 216 aaKnown RBP16.33■□□□□ 0.2
HOXD11-202ENST00000498438 ACAA2P42765 397 aaKnown RBP16.33■□□□□ 0.2
HOXD11-202ENST00000498438 OR3A2P47893 321 aa16.33■□□□□ 0.2
HOXD11-202ENST00000498438 ZNF311Q5JNZ3 666 aa16.33■□□□□ 0.2
HOXD11-202ENST00000498438 NFKBIDQ8NI38 313 aa16.33■□□□□ 0.2
HOXD11-202ENST00000498438 ADAM19Q9H013 955 aa16.33■□□□□ 0.2
HOXD11-202ENST00000498438 IKZF5Q9H5V7 419 aa16.33■□□□□ 0.2
HOXD11-202ENST00000498438 TMEM181Q9P2C4 612 aa16.33■□□□□ 0.2
HOXD11-202ENST00000498438 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.33■□□□□ 0.2
HOXD11-202ENST00000498438 ZNF232Q9UNY5 417 aa16.33■□□□□ 0.2
HOXD11-202ENST00000498438 TRIM33Q9UPN9 1127 aa16.33■□□□□ 0.2
HOXD11-202ENST00000498438 GPR52Q9Y2T5 361 aa16.33■□□□□ 0.2
HOXD11-202ENST00000498438 IFT52Q9Y366 437 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms