RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 TMEM171Q8WVE6 324 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 ZNF300Q96RE9 604 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-214ENST00000496043 BDH2Q9BUT1 245 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 ESRP2Q9H6T0 727 aaKnown RBP11.3□□□□□ -0.6
PTPRF-214ENST00000496043 RMND5AQ9H871 391 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 CALML5Q9NZT1 146 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 ZIM2Q9NZV7 527 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 EMC3Q9P0I2 261 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 PRSS50Q9UI38 385 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 TRAPPC4Q9Y296 219 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 HRNRQ86YZ3 2850 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-214ENST00000496043 SETD2Q9BYW2 2564 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-214ENST00000496043 IGKV3D-15A0A087WSY6 115 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 TMED7-TICAM2A0A0A6YYA0 188 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 GPR171O14626 319 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 HS3ST1O14792 307 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 DNPH1O43598 174 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 UQCRBP14927 111 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 SLC1A3P43003 542 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 CRATP43155 626 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 POLR2HP52434 150 aaKnown RBP11.29□□□□□ -0.6
PTPRF-214ENST00000496043 POLR2JP52435 117 aaKnown RBP11.29□□□□□ -0.6
PTPRF-214ENST00000496043 MAP2K6P52564 334 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 NCMAPQ5T1S8 102 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 ADAM5Q6NVV9 412 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 MSANTD1Q6ZTZ1 278 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 SSX8Q7RTT4 187 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 YTHDF3Q7Z739 585 aaKnown RBP11.29□□□□□ -0.6
PTPRF-214ENST00000496043 PEX5LQ8IYB4 626 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 ZNF440Q8IYI8 595 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 PNPT1Q8TCS8 783 aaKnown RBP11.29□□□□□ -0.6
PTPRF-214ENST00000496043 WDR60Q8WVS4 1066 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 AKAP1Q92667 903 aaKnown RBP eCLIP11.29□□□□□ -0.6
PTPRF-214ENST00000496043 DDIT4LQ96D03 193 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 MUCL1Q96DR8 90 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 PERPQ96FX8 193 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 ITCHQ96J02 903 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 ARL5BQ96KC2 179 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 NAA11Q9BSU3 229 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-214ENST00000496043 GSX2Q9BZM3 304 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 CXorf56Q9H5V9 222 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 SDR39U1Q9NRG7 319 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-214ENST00000496043 TMEM181Q9P2C4 612 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 ZNF232Q9UNY5 417 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 NOSIPQ9Y314 301 aaKnown RBP11.29□□□□□ -0.6
PTPRF-214ENST00000496043 TMED7Q9Y3B3 224 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 HEATR5AQ86XA9 2040 aa11.29□□□□□ -0.6
PTPRF-214ENST00000496043 ACANP16112 2415 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 TMEM247A6NEH6 219 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 CFAP73A6NFT4 308 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 FAM171A2A8MVW0 826 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 FAAHO00519 579 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 AP3D1O14617 1153 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 ZNF208O43345 1280 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 EIF1BO60739 113 aaKnown RBP11.28□□□□□ -0.6
PTPRF-214ENST00000496043 ADAM11O75078 769 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 LYZL6O75951 148 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 CD3EP07766 207 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 RPS4Y1P22090 263 aaKnown RBP11.28□□□□□ -0.6
PTPRF-214ENST00000496043 TACR3P29371 465 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 SLC35A1P78382 337 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 ZSWIM7Q19AV6 140 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 AGBL2Q5U5Z8 902 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 FBXW9Q5XUX1 488 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 P2RY8Q86VZ1 359 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 UBE2J2Q8N2K1 259 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 MIER2Q8N344 545 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 OR52P1PQ8NH57 321 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 PIGXQ8TBF5 258 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 POM121Q96HA1 1249 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 Q96MF0 132 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 OR52B2Q96RD2 323 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 POTEKPQ9BYX7 375 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 OR11A1Q9GZK7 315 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 ADAM19Q9H013 955 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 TPT1P8Q9HAU6 139 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 THUMPD1Q9NXG2 353 aaKnown RBP11.28□□□□□ -0.6
PTPRF-214ENST00000496043 P2RX2Q9UBL9 471 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 OSGIN1Q9UJX0 560 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 RNF115Q9Y4L5 304 aa11.28□□□□□ -0.6
PTPRF-214ENST00000496043 MAP1AP78559 2803 aaPredicted RBP11.27□□□□□ -0.6
PTPRF-214ENST00000496043 A0A0G2JPF8 293 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 FAM234BA2RU67 622 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 ZNF716A6NP11 495 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 HNRNPCL2B2RXH8 293 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 HNRNPCL3B7ZW38 293 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 CLOCKO15516 846 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 HNRNPCL1O60812 293 aaKnown RBP11.27□□□□□ -0.61
PTPRF-214ENST00000496043 MRPL33O75394 65 aaKnown RBP11.27□□□□□ -0.61
PTPRF-214ENST00000496043 PGM3O95394 542 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 TFPTP0C1Z6 253 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 HNRNPCL4P0DMR1 293 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 ETFAP13804 333 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 PAX1P15863 534 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 GGT1P19440 569 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 IGHV1-2P23083 117 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 CXCR1P25024 350 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 PTH2RP49190 550 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 MVDP53602 400 aa11.27□□□□□ -0.61
PTPRF-214ENST00000496043 CRISP3P54108 245 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms