RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 SPIBQ01892 262 aa15.52■□□□□ 0.08
LIME1-208ENST00000493265 AAGABQ6PD74 315 aa15.52■□□□□ 0.08
LIME1-208ENST00000493265 ZNF613Q6PF04 617 aa15.52■□□□□ 0.08
LIME1-208ENST00000493265 ADGRG3Q86Y34 549 aa15.52■□□□□ 0.08
LIME1-208ENST00000493265 P3H2Q8IVL5 708 aa15.52■□□□□ 0.08
LIME1-208ENST00000493265 UBQLNLQ8IYU4 475 aa15.52■□□□□ 0.08
LIME1-208ENST00000493265 OR52J3Q8NH60 311 aa15.52■□□□□ 0.08
LIME1-208ENST00000493265 CPT1CQ8TCG5 803 aa15.52■□□□□ 0.08
LIME1-208ENST00000493265 DNAJA4Q8WW22 397 aaPredicted RBP15.52■□□□□ 0.08
LIME1-208ENST00000493265 ABTB1Q969K4 478 aaPredicted RBP15.52■□□□□ 0.08
LIME1-208ENST00000493265 GPR137Q96N19 417 aa15.52■□□□□ 0.08
LIME1-208ENST00000493265 PIP5K1AQ99755 562 aa15.52■□□□□ 0.08
LIME1-208ENST00000493265 ADAM19Q9H013 955 aa15.52■□□□□ 0.08
LIME1-208ENST00000493265 SERINC1Q9NRX5 453 aa15.52■□□□□ 0.08
LIME1-208ENST00000493265 CCM2LQ9NUG4 571 aaPredicted RBP15.52■□□□□ 0.08
LIME1-208ENST00000493265 SPRR3Q9UBC9 169 aa15.52■□□□□ 0.08
LIME1-208ENST00000493265 AP4S1Q9Y587 144 aa15.52■□□□□ 0.08
LIME1-208ENST00000493265 TMEM72A0PK05 275 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 C7orf72A4D263 438 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 SEC14L5O43304 696 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 EFNA2O43921 213 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 SUSD5O60279 629 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 IGHG3P01860 377 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 ZNF17P17021 662 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 BMP7P18075 431 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 SLC7A1P30825 629 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 GFRA1P56159 465 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 SRYQ05066 204 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 C3AR1Q16581 482 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 TMEM44Q2T9K0 475 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 IQCCQ4KMZ1 466 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 SLC25A53Q5H9E4 307 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 FGD3Q5JSP0 725 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 DCST1Q5T197 706 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 ZNF324BQ6AW86 544 aaPredicted RBP15.51■□□□□ 0.07
LIME1-208ENST00000493265 ATG4DQ86TL0 474 aaPredicted RBP15.51■□□□□ 0.07
LIME1-208ENST00000493265 LILRA2Q8N149 483 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 STMN2Q93045 179 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 ZNF347Q96SE7 839 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 OR11A1Q9GZK7 315 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 YY1AP1Q9H869 796 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 PLEKHB1Q9UF11 243 aaPredicted RBP15.51■□□□□ 0.07
LIME1-208ENST00000493265 CHRNA9Q9UGM1 479 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 NOTCH2Q04721 2471 aa15.51■□□□□ 0.07
LIME1-208ENST00000493265 FREM3P0C091 2139 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 UNC79Q9P2D8 2635 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 NPIPA2E9PIF3 369 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 NPIPA3F8WFD2 350 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 KPNA4O00629 521 aaPredicted RBP15.5■□□□□ 0.07
LIME1-208ENST00000493265 GNGT2O14610 69 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 CHP2O43745 196 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 HCN1O60741 890 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 LYPD3O95274 346 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 CST1P01037 141 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 H1F0P07305 194 aaKnown RBP15.5■□□□□ 0.07
LIME1-208ENST00000493265 PNMTP11086 282 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 CHMP24386 653 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 ADH6P28332 368 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 SHC1P29353 583 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 RRM2P31350 389 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 MAGEA2P43356 314 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 ST3GAL3Q11203 375 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 PPP1R8Q12972 351 aaKnown RBP15.5■□□□□ 0.07
LIME1-208ENST00000493265 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.5■□□□□ 0.07
LIME1-208ENST00000493265 TMEM176BQ3YBM2 270 aaPredicted RBP15.5■□□□□ 0.07
LIME1-208ENST00000493265 GFRALQ6UXV0 394 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 WDR88Q6ZMY6 472 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 PIWIL3Q7Z3Z3 882 aaKnown RBP15.5■□□□□ 0.07
LIME1-208ENST00000493265 NKAIN4Q8IVV8 208 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 GHDCQ8N2G8 530 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 SLC38A4Q969I6 547 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 POLR2J2Q9GZM3 115 aaKnown RBP15.5■□□□□ 0.07
LIME1-208ENST00000493265 POLR2J3Q9H1A7 115 aaKnown RBP15.5■□□□□ 0.07
LIME1-208ENST00000493265 NMNAT1Q9HAN9 279 aaPredicted RBP15.5■□□□□ 0.07
LIME1-208ENST00000493265 ACAD8Q9UKU7 415 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 SHANK1Q9Y566 2161 aa15.5■□□□□ 0.07
LIME1-208ENST00000493265 H0YC42 278 aa15.49■□□□□ 0.07
LIME1-208ENST00000493265 ETV2O00321 342 aaPredicted RBP15.49■□□□□ 0.07
LIME1-208ENST00000493265 PRSS23O95084 383 aa15.49■□□□□ 0.07
LIME1-208ENST00000493265 GADD45GO95257 159 aa15.49■□□□□ 0.07
LIME1-208ENST00000493265 ELK4P28324 431 aa15.49■□□□□ 0.07
LIME1-208ENST00000493265 TDGF1P3P51864 188 aa15.49■□□□□ 0.07
LIME1-208ENST00000493265 TPD52P55327 224 aaPredicted RBP15.49■□□□□ 0.07
LIME1-208ENST00000493265 CLDN20P56880 219 aa15.49■□□□□ 0.07
LIME1-208ENST00000493265 SELENBP1Q13228 472 aa15.49■□□□□ 0.07
LIME1-208ENST00000493265 TRAM2Q15035 370 aa15.49■□□□□ 0.07
LIME1-208ENST00000493265 KRTCAP3Q53RY4 240 aa15.49■□□□□ 0.07
LIME1-208ENST00000493265 C3orf33Q6P1S2 294 aa15.49■□□□□ 0.07
LIME1-208ENST00000493265 C10orf67Q8IYJ2 551 aa15.49■□□□□ 0.07
LIME1-208ENST00000493265 OFCC1Q8IZS5 231 aa15.49■□□□□ 0.07
LIME1-208ENST00000493265 GALNT11Q8NCW6 608 aa15.49■□□□□ 0.07
LIME1-208ENST00000493265 PAPD5Q8NDF8 572 aaKnown RBP15.49■□□□□ 0.07
LIME1-208ENST00000493265 OR5M9Q8NGP3 310 aa15.49■□□□□ 0.07
LIME1-208ENST00000493265 TMEM255BQ8WV15 326 aa15.49■□□□□ 0.07
LIME1-208ENST00000493265 SLX1AQ9BQ83 275 aa15.49■□□□□ 0.07
LIME1-208ENST00000493265 ALKBH4Q9NXW9 302 aa15.49■□□□□ 0.07
LIME1-208ENST00000493265 CAMK2AQ9UQM7 478 aa15.49■□□□□ 0.07
LIME1-208ENST00000493265 SPIN1Q9Y657 262 aaPredicted RBP15.49■□□□□ 0.07
LIME1-208ENST00000493265 A0A087WUJ7 227 aa15.48■□□□□ 0.07
LIME1-208ENST00000493265 A0A1W2PNR3 127 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms