RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 CENPVL1A0A0U1RR11 272 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 LRP5LA4QPB2 252 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 AZIN1O14977 448 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 LSM1O15116 133 aaKnown RBP12.19□□□□□ -0.46
VARS-227ENST00000489979 SCAMP2O15127 329 aaKnown RBP12.19□□□□□ -0.46
VARS-227ENST00000489979 SPRY1O43609 319 aaPredicted RBP12.19□□□□□ -0.46
VARS-227ENST00000489979 PMS2P2O95744 297 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 PROCP04070 461 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 ABHD2P08910 425 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 UBTFL6P0CB48 400 aaPredicted RBP12.19□□□□□ -0.46
VARS-227ENST00000489979 PGCP20142 388 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 SRP14P37108 136 aaKnown RBP12.19□□□□□ -0.46
VARS-227ENST00000489979 HPCAL1P37235 193 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 SLC16A1P53985 500 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 GPR68Q15743 365 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 CASP12Q6UXS9 341 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 OLIG3Q7RTU3 272 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 SLC46A3Q7Z3Q1 461 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 C17orf78Q8N4C9 275 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 C1orf162Q8NEQ5 155 aaPredicted RBP12.19□□□□□ -0.46
VARS-227ENST00000489979 PSMA8Q8TAA3 256 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 OR5P2Q8WZ92 322 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 NMUR2Q9GZQ4 415 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 ADAM19Q9H013 955 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 CTPS2Q9NRF8 586 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 SPIN1Q9Y657 262 aaPredicted RBP12.19□□□□□ -0.46
VARS-227ENST00000489979 TENM1Q9UKZ4 2725 aa12.19□□□□□ -0.46
VARS-227ENST00000489979 GLRA3O75311 464 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 C6orf47O95873 294 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 CSTAP01040 98 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 APOBEC1P41238 236 aaKnown RBP12.18□□□□□ -0.46
VARS-227ENST00000489979 MAGEA8P43361 318 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 OR2B6P58173 313 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 PRPS1P60891 318 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 RPS26P62854 115 aaKnown RBP12.18□□□□□ -0.46
VARS-227ENST00000489979 ZNF141Q15928 474 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 TSPO2Q5TGU0 170 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 RNF165Q6ZSG1 346 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 C17orf53Q8N3J3 647 aaPredicted RBP12.18□□□□□ -0.46
VARS-227ENST00000489979 ZNF540Q8NDQ6 660 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 OR5AK3PQ8NH89 298 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 SFXN5Q8TD22 340 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 MZB1Q8WU39 189 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 CCDC106Q9BWC9 280 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 OR11A1Q9GZK7 315 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 SLC7A10Q9NS82 523 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 OXSMQ9NWU1 459 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 PSMC3IPQ9P2W1 217 aaPredicted RBP12.18□□□□□ -0.46
VARS-227ENST00000489979 CHRNA9Q9UGM1 479 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 TBK1Q9UHD2 729 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 TMEFF2Q9UIK5 374 aaPredicted RBP12.18□□□□□ -0.46
VARS-227ENST00000489979 HDGFL3Q9Y3E1 203 aa12.18□□□□□ -0.46
VARS-227ENST00000489979 A0A1W2PPM1 405 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 KLF11O14901 512 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 DNPH1O43598 174 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 PLIN3O60664 434 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 FCMRO60667 390 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 UGT2B17O75795 530 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 SLU7O95391 586 aaKnown RBP12.17□□□□□ -0.46
VARS-227ENST00000489979 STAMBPO95630 424 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 WNT11O96014 354 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 IL2RGP31785 369 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 SERPINF1P36955 418 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 RPL3P39023 403 aaKnown RBP12.17□□□□□ -0.46
VARS-227ENST00000489979 TGFBR3Q03167 851 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 LSM12Q3MHD2 195 aaKnown RBP12.17□□□□□ -0.46
VARS-227ENST00000489979 KLHL24Q6TFL4 600 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 EIF3MQ7L2H7 374 aaKnown RBP12.17□□□□□ -0.46
VARS-227ENST00000489979 SPATA19Q7Z5L4 167 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 LSRQ86X29 649 aaPredicted RBP12.17□□□□□ -0.46
VARS-227ENST00000489979 ZNF563Q8TA94 476 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 CA10Q9NS85 328 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 PARPBPQ9NWS1 579 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 GIMAP2Q9UG22 337 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 MKLN1Q9UL63 735 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 SLC9A8Q9Y2E8 581 aa12.17□□□□□ -0.46
VARS-227ENST00000489979 IGHV1-18A0A0C4DH31 117 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 TMEM114B3SHH9 223 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 B9A039 149 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 ANKRD28O15084 1053 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 CFLARO15519 480 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 RIPK2O43353 540 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 BCAS1O75363 584 aaPredicted RBP12.16□□□□□ -0.46
VARS-227ENST00000489979 STX11O75558 287 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 URI1O94763 535 aaPredicted RBP12.16□□□□□ -0.46
VARS-227ENST00000489979 CHEK2O96017 543 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 CPA3P15088 417 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 CDH2P19022 906 aaPredicted RBP12.16□□□□□ -0.46
VARS-227ENST00000489979 CCNA2P20248 432 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 MATN1P21941 496 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 MPGP29372 298 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 RYKP34925 604 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 PGM1P36871 562 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 H3F3AP84243 136 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 MAPK14Q16539 360 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 ZSWIM7Q19AV6 140 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 CCDC153Q494R4 210 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 HIKESHIQ53FT3 197 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 KANK2Q63ZY3 851 aa12.16□□□□□ -0.46
VARS-227ENST00000489979 ADGRG3Q86Y34 549 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms