RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 MYLPFQ96A32 169 aa1.39□□□□□ -2.19
SMC4-220ENST00000488017 RPUSD4Q96CM3 377 aaKnown RBP1.39□□□□□ -2.19
SMC4-220ENST00000488017 FAHD2AQ96GK7 314 aa1.39□□□□□ -2.19
SMC4-220ENST00000488017 DUSP16Q9BY84 665 aa1.39□□□□□ -2.19
SMC4-220ENST00000488017 DPH5Q9H2P9 285 aa1.39□□□□□ -2.19
SMC4-220ENST00000488017 COQ10BQ9H8M1 238 aa1.39□□□□□ -2.19
SMC4-220ENST00000488017 WDR76Q9H967 626 aa1.39□□□□□ -2.19
SMC4-220ENST00000488017 B3GNT2Q9NY97 397 aa1.39□□□□□ -2.19
SMC4-220ENST00000488017 AURKCQ9UQB9 309 aa1.39□□□□□ -2.19
SMC4-220ENST00000488017 GSTK1Q9Y2Q3 226 aa1.39□□□□□ -2.19
SMC4-220ENST00000488017 PLLPQ9Y342 182 aa1.39□□□□□ -2.19
SMC4-220ENST00000488017 TTC21BQ7Z4L5 1316 aa1.39□□□□□ -2.19
SMC4-220ENST00000488017 KIF26AQ9ULI4 1882 aaPredicted RBP1.38□□□□□ -2.19
SMC4-220ENST00000488017 PPIAL4CA0A0B4J2A2 164 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 VSTM2BA6NLU5 285 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 TMX2-CTNND1H3BSU7 103 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 K7EPI3 171 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 CLDN5O00501 218 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 HCN1O60741 890 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 B3GALNT1O75752 331 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 SLITRK3O94933 977 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 GNA14O95837 355 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 IGKV1D-16P01601 117 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 PCCAP05165 728 aaPredicted RBP1.38□□□□□ -2.19
SMC4-220ENST00000488017 PPIAL4GP0DN37 164 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 CALCBP10092 127 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 POLR2EP19388 210 aaKnown RBP1.38□□□□□ -2.19
SMC4-220ENST00000488017 TPSB2P20231 275 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 CYP2B6P20813 491 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 PSMA2P25787 234 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 LONP1P36776 959 aaKnown RBP1.38□□□□□ -2.19
SMC4-220ENST00000488017 HPCAL1P37235 193 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 LHX2P50458 406 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 PLA2G16P53816 162 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 POLR2FP61218 127 aaKnown RBP1.38□□□□□ -2.19
SMC4-220ENST00000488017 CSNK1G2P78368 415 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 RIPPLY1Q0D2K3 151 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 SLC10A7Q0GE19 358 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 PJVKQ0ZLH3 352 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 RAB40BQ12829 278 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 UNC119Q13432 240 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 ARFRP1Q13795 201 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 MXD4Q14582 209 aaPredicted RBP1.38□□□□□ -2.19
SMC4-220ENST00000488017 TPSAB1Q15661 275 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 CCDC57Q2TAC2 916 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 GGTA1PQ4G0N0 100 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 TMEM41BQ5BJD5 291 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 RABGAP1LQ5R372 815 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 CASC10Q5T4H9 136 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 NCR3LG1Q68D85 454 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 BLOC1S2Q6QNY1 142 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 C16orf62Q7Z3J2 963 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 VRK2Q86Y07 508 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 ZNF573Q86YE8 665 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 CENPLQ8N0S6 344 aaPredicted RBP1.38□□□□□ -2.19
SMC4-220ENST00000488017 LRRC43Q8N309 656 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 MTURNQ8N3F0 131 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 KIR3DL3Q8N743 410 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 C15orf54Q8N8G6 183 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 FADS6Q8N9I5 356 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 ZNF740Q8NDX6 193 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 OR51G1Q8NGK1 321 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 CCDC110Q8TBZ0 833 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 PNPT1Q8TCS8 783 aaKnown RBP1.38□□□□□ -2.19
SMC4-220ENST00000488017 PIGCQ92535 297 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 PGLYRP4Q96LB8 373 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 C12orf66Q96MD2 445 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 KLHDC3Q9BQ90 382 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 ZNF416Q9BWM5 594 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 POLR2J2Q9GZM3 115 aaKnown RBP1.38□□□□□ -2.19
SMC4-220ENST00000488017 MAGT1Q9H0U3 335 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 POLR2J3Q9H1A7 115 aaKnown RBP1.38□□□□□ -2.19
SMC4-220ENST00000488017 LIN28AQ9H9Z2 209 aaKnown RBP1.38□□□□□ -2.19
SMC4-220ENST00000488017 PALMDQ9NP74 551 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 SIGLEC8Q9NYZ4 499 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 STOX2Q9P2F5 926 aaPredicted RBP1.38□□□□□ -2.19
SMC4-220ENST00000488017 GNG12Q9UBI6 72 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 WARS2Q9UGM6 360 aaKnown RBP1.38□□□□□ -2.19
SMC4-220ENST00000488017 NUFIP1Q9UHK0 495 aaKnown RBP1.38□□□□□ -2.19
SMC4-220ENST00000488017 ERVW-1Q9UQF0 538 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 NEUROG3Q9Y4Z2 214 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 ALG6Q9Y672 507 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 U3KQV3 271 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 SF3B1O75533 1304 aaKnown RBP eCLIP1.38□□□□□ -2.19
SMC4-220ENST00000488017 FRMPD4Q14CM0 1322 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 CLSPNQ9HAW4 1339 aa1.38□□□□□ -2.19
SMC4-220ENST00000488017 IGHV2-70DA0A0C4DH43 119 aa1.37□□□□□ -2.19
SMC4-220ENST00000488017 IGHV3-64DA0A0J9YX35 117 aa1.37□□□□□ -2.19
SMC4-220ENST00000488017 HELTA6NFD8 242 aa1.37□□□□□ -2.19
SMC4-220ENST00000488017 G3V4G9 280 aa1.37□□□□□ -2.19
SMC4-220ENST00000488017 PES1O00541 588 aaKnown RBP1.37□□□□□ -2.19
SMC4-220ENST00000488017 CLDN3O15551 220 aa1.37□□□□□ -2.19
SMC4-220ENST00000488017 ZSCAN12O43309 604 aa1.37□□□□□ -2.19
SMC4-220ENST00000488017 RIPK2O43353 540 aa1.37□□□□□ -2.19
SMC4-220ENST00000488017 SMPD2O60906 423 aa1.37□□□□□ -2.19
SMC4-220ENST00000488017 ECI2O75521 394 aa1.37□□□□□ -2.19
SMC4-220ENST00000488017 IGKV4-1P06312 121 aa1.37□□□□□ -2.19
SMC4-220ENST00000488017 RBMY1CP0DJD4 496 aa1.37□□□□□ -2.19
SMC4-220ENST00000488017 RNH1P13489 461 aaKnown RBP1.37□□□□□ -2.19
SMC4-220ENST00000488017 PGCP20142 388 aa1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms