RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 ATAD3AQ9NVI7 634 aa17.05■□□□□ 0.32
SMPDL3A-202ENST00000487215 PMF1-BGLAPU3KQ54 211 aa17.05■□□□□ 0.32
SMPDL3A-202ENST00000487215 PDLIM1O00151 329 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 GPR171O14626 319 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 FCMRO60667 390 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 MRPL33O75394 65 aaKnown RBP17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 UGT2B17O75795 530 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 PMS2P2O95744 297 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 CSTAP01040 98 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 CHRNGP07510 517 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 SLC16A1P53985 500 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 SLC25A3Q00325 362 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 PCLAFQ15004 111 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 FAM120AOSQ5T036 256 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 NATD1Q8N6N6 113 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 COQ8BQ96D53 544 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 ARL5BQ96KC2 179 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 PPP3R2Q96LZ3 170 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 C1orf50Q9BV19 199 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 CCDC106Q9BWC9 280 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 FKRPQ9H9S5 495 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 CTPS2Q9NRF8 586 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 CHRNA9Q9UGM1 479 aa17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 SPIN1Q9Y657 262 aaPredicted RBP17.04■□□□□ 0.32
SMPDL3A-202ENST00000487215 LOC100289279A0A1B0GTE1 492 aa17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 COPEO14579 308 aa17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 CFLARO15519 480 aa17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 PEX11AO75192 247 aa17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 STX11O75558 287 aa17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 FGF4P08620 206 aa17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 APOBEC3AP31941 199 aaPredicted RBP17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 SOAT1P35610 550 aa17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 PDLIM4P50479 330 aa17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 HBA1P69905 142 aa17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 PHC1P78364 1004 aa17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 C9orf135Q5VTT2 229 aa17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 EIF3MQ7L2H7 374 aaKnown RBP17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 CCDC103Q8IW40 242 aa17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 KRTCAP2Q8N6L1 136 aa17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 MSI2Q96DH6 328 aaKnown RBP17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 PRR14Q9BWN1 585 aa17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 SLC17A5Q9NRA2 495 aa17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 MKLN1Q9UL63 735 aa17.03■□□□□ 0.32
SMPDL3A-202ENST00000487215 ATP6V1G2-DDX39BF2Z307 99 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 DNPH1O43598 174 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 TRIM13O60858 407 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 BCAS1O75363 584 aaPredicted RBP17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 LYPLA1O75608 230 aaPredicted RBP17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 AK1P00568 194 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 MATN1P21941 496 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 APOBEC1P41238 236 aaKnown RBP17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 NR4A2P43354 598 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 MAPK14Q16539 360 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 MST1LQ2TV78 715 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 ARHGAP11BQ3KRB8 267 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 XKR7Q5GH72 579 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 BHLHB9Q6PI77 547 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 CASP12Q6UXS9 341 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 C17orf78Q8N4C9 275 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 FAM71CQ8NEG0 241 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 UBLCP1Q8WVY7 318 aaPredicted RBP17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 SORCS2Q96PQ0 1159 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 PIMREGQ9BSJ6 248 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 BHLHE41Q9C0J9 482 aaPredicted RBP17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 OR11A1Q9GZK7 315 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 ZNF350Q9GZX5 532 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 EML4Q9HC35 981 aaKnown RBP17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 AMDHD2Q9Y303 409 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 HDGFL3Q9Y3E1 203 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 FKBP7Q9Y680 259 aa17.02■□□□□ 0.32
SMPDL3A-202ENST00000487215 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 DUXAA6NLW8 204 aa17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 NDUFS8O00217 210 aa17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 SHBGP04278 402 aa17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 PGM1P36871 562 aa17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 SWI5Q1ZZU3 235 aa17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 C6orf120Q7Z4R8 191 aa17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 RIMKLAQ8IXN7 391 aa17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 C4orf33Q8N1A6 199 aa17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 CLEC4FQ8N1N0 589 aa17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 C1orf162Q8NEQ5 155 aaPredicted RBP17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 ZNF563Q8TA94 476 aa17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 C3orf49Q96BT1 292 aa17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 FBXO17Q96EF6 278 aa17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 PRPF18Q99633 342 aaKnown RBP17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 DUSP26Q9BV47 211 aa17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 SLC7A10Q9NS82 523 aa17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 DCTN4Q9UJW0 460 aa17.01■□□□□ 0.31
SMPDL3A-202ENST00000487215 IGHV4-61A0A0C4DH41 118 aa17■□□□□ 0.31
SMPDL3A-202ENST00000487215 ANKRD28O15084 1053 aa17■□□□□ 0.31
SMPDL3A-202ENST00000487215 APEHP13798 732 aaKnown RBP17■□□□□ 0.31
SMPDL3A-202ENST00000487215 KRT4P19013 534 aa17■□□□□ 0.31
SMPDL3A-202ENST00000487215 HNF1AP20823 631 aa17■□□□□ 0.31
SMPDL3A-202ENST00000487215 PRPS1L1P21108 318 aa17■□□□□ 0.31
SMPDL3A-202ENST00000487215 RYKP34925 604 aa17■□□□□ 0.31
SMPDL3A-202ENST00000487215 MAGEA8P43361 318 aa17■□□□□ 0.31
SMPDL3A-202ENST00000487215 OR2B6P58173 313 aa17■□□□□ 0.31
SMPDL3A-202ENST00000487215 ATP6AP1LQ52LC2 224 aa17■□□□□ 0.31
SMPDL3A-202ENST00000487215 C6orf136Q5SQH8 315 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms